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View Structure Prediction Details

Protein: VATO_SCHPO
Organism: Schizosaccharomyces pombe 972h-
Length: 199 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for VATO_SCHPO.

Description E-value Query
Range
Subject
Range
gi|47212525 - gi|47212525|emb|CAG06230.1| unnamed protein product [Tetraodon nigroviridis]
180.0 [0..3] [190..13]
gi|50751470 - gi|50751470|ref|XP_422414.1| PREDICTED: similar to ATPase, H+ transporting, V0 subunit B; ATPase, H+...
178.0 [0..6] [194..158]
gi|109127279 - gi|109127279|ref|XP_001085529.1| PREDICTED: similar to Vacuolar ATP synthase 16 kDa proteolipid subu...
178.0 [0..57] [194..288]
gi|52789283 - gi|52789283|gb|AAH83129.1| Atp6v0c protein [Mus musculus]
174.0 [0..22] [194..34]
gi|134091324, gi... - gi|50255735|gb|EAL18467.1| hypothetical protein CNBJ1090 [Cryptococcus neoformans var. neoformans B-...
169.0 [0..12] [199..12]
gi|27694747 - gi|27694747|gb|AAH43805.1| MGC64475 protein [Xenopus laevis]
169.0 [0..5] [194..28]
gi|58381684, gi|... - gi|58381684|ref|XP_311406.2| ENSANGP00000025336 [Anopheles gambiae str. PEST], gi|55242897|gb|EAA070...
168.0 [0..39] [194..43]
gi|238878295 - gi|238878295|gb|EEQ41933.1| vacuolar ATP synthase subunit c'' [Candida albicans WO-1]
gi|46444114, gi|... - gi|68467464|ref|XP_722165.1| hypothetical protein CaO19.4954 [Candida albicans SC5314], gi|46444114|...
orf19.4954 - orf19.4954 CGDID:CAL0006331 Assembly 19, Contig19-10216 (103449, 102859) CDS, reverse complemented, ...
165.0 [0..5] [199..2]
gi|49110393, gi|... - gi|67901232|ref|XP_680872.1| hypothetical protein AN7603.2 [Aspergillus nidulans FGSC A4], ref|XP_41...
165.0 [0..5] [198..4]

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Predicted Domain #1
Region A:
Residues: [1-199]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLFSTSLWT TTVMSIIVGL YMLFHNSGES FDFGSFLLDT SPYTWGLLGI ASCVAFGIIG  60
   61 AAWGIFICGT SILGGAVKAP RIKTKNLISI IFCEVVAIYS LIIAIVFSAK INDINPAGFY 120
  121 TKSHYYTGFA LFWGGITVGL CNLICGVCVG ITGSSAALAD AQDASLFVKV LVVEIFGSVL 180
  181 GLFGLIVGLL IGGKASDFS

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 22.0
Match: 2bl2A
Description: The membrane rotor of the V-type ATPase from Enterococcus hirae
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle