YRC Public Data Repository - Protein Structure Prediction

Protein:	AF9_SCHPO
Organism:	Schizosaccharomyces pombe 972h-
Length:	217 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for AF9_SCHPO.

Description	E-value	Query Range	Subject Range
gi\|151944428 - gi\|151944428\|gb\|EDN62706.1\| conserved protein [Saccharomyces cerevisiae YJM789] YAF9 - Subunit of both the NuA4 histone H4 acetyltransferase complex and the SWR1 complex, may function to ... gi\|207341734 - gi\|207341734\|gb\|EDZ69709.1\| YNL107Wp-like protein [Saccharomyces cerevisiae AWRI1631] AF9_YEAST - Protein AF-9 homolog OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YAF9 PE=1 SV=1	265.0	[0..1]	[212..1]
AF9_ASHGO - Protein AF-9 homolog OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) G... AF9_ASHGO - Protein AF-9 homolog OS=Ashbya gossypii GN=YAF9 PE=3 SV=1	262.0	[0..1]	[205..1]
gi\|39940124, gi\|... - gi\|39940124\|ref\|XP_359599.1\| hypothetical protein MGG_05178 [Magnaporthe grisea 70-15], gb\|EAA52486....	243.0	[0..1]	[208..1]
AF9_EMENI - Protein AF-9 homolog OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M... AF9_EMENI - Protein AF-9 homolog OS=Emericella nidulans GN=yaf9 PE=3 SV=1	242.0	[0..5]	[204..8]
gi\|114197706, gi... - gi\|115492437\|ref\|XP_001210846.1\| conserved hypothetical protein [Aspergillus terreus NIH2624], gi\|11...	240.0	[0..4]	[213..50]
gi\|46226375 - gi\|46226375\|gb\|EAK87380.1\| transcription factor TFIIF [Cryptosporidium parvum Iowa II] gi\|66356426 - gi\|66356426\|ref\|XP_625391.1\| transcription factor TFIIF [Cryptosporidium parvum Iowa II]	238.0	[0..4]	[214..23]
gi\|54657513 - gi\|54657513\|gb\|EAL36275.1\| Gas41 [Cryptosporidium hominis] gi\|67602817 - gi\|67602817\|ref\|XP_666505.1\| Gas41 [Cryptosporidium hominis TU502]	237.0	[0..4]	[214..23]
AF9_GIBZE - Protein AF-9 homolog OS=Gibberella zeae (strain PH-1 / ATCC MYA-4620 / FGSC 9075 / NRRL 31084) GN=YA... AF9_GIBZE - Protein AF-9 homolog OS=Gibberella zeae GN=YAF9 PE=3 SV=1	235.0	[0..1]	[212..1]
TA14B_ARATH - Transcription initiation factor TFIID subunit 14b OS=Arabidopsis thaliana GN=TAF14B PE=1 SV=1	231.0	[0..4]	[213..36]

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Predicted Domain #1

Region A:
Residues: [1-115]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAPNTRVSKC QISRPILVGN DAKPLTKEEK EKAPTDHTHT WRIFVEGVDG EDISKWVRKV  60
   61 VFKLHDTYNN PTRTIESPPF EVIETGWGEF DIMVRIFFAP EAHEKALTFY HHLKL

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	40.853872
Match:	PF03366.7
Description:	No description for PF03366.7 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [116-217]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 HPYGPRMEEM KASGGLVESV QYEEIVFNEP FEYTYKLLSQ NPIGDGHGLA VESEPDHPFS  60
   61 QQLEQDEADK LDFAIQEVKK TIEMYKQQVQ SLQGQKSSTP VE

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits