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View Structure Prediction Details

Protein: PRDBP_MOUSE
Organism: Mus musculus
Length: 260 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PRDBP_MOUSE.

Description E-value Query
Range
Subject
Range
PRDBP_RAT - Protein kinase C delta-binding protein OS=Rattus norvegicus GN=Prkcdbp PE=1 SV=1
347.0 [0..1] [260..1]
gi|114635872 - gi|114635872|ref|XP_001164205.1| PREDICTED: protein kinase C, delta binding protein isoform 2 [Pan t...
gi|119589139, gi... - gi|15425753|gb|AAK97572.1|AF339881_1 HSRBC protein [Homo sapiens], gi|15420957|gb|AAK97528.1|AF40819...
gi|123997647, gi... - gi|123997647|gb|ABM86425.1| protein kinase C, delta binding protein [synthetic construct], gi|123982...
292.0 [0..1] [260..1]
gi|47132587 - gi|47132587|ref|NP_659477.2| protein kinase C, delta binding protein [Homo sapiens]
289.0 [0..1] [260..1]
gi|109107543 - gi|109107543|ref|XP_001101908.1| PREDICTED: similar to protein kinase C, delta binding protein [Maca...
279.0 [0..1] [250..1]
PRDBP_BOVIN - Protein kinase C delta-binding protein OS=Bos taurus GN=PRKCDBP PE=2 SV=1
274.0 [0..1] [260..1]

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Predicted Domain #1
Region A:
Residues: [1-132]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGESALEPGP VPETPAGGPV HAVTVVTLLE KLATMLEALR ERQGGLAERQ GGLAGSVRRI  60
   61 QSGLGALSRS HDTTSNTLTQ LLAKAERVGS HADAAQERAV RRAAQVQRLE ANHGLLVARG 120
  121 KLHVLLFKEE TE

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

    MCM
Score
GO
Score
GO
Term
SCOP
Match
SCOP Description
View Download 0.890 N/A N/A f.17.1 F1F0 ATP synthase subunit C

Predicted Domain #2
Region A:
Residues: [133-260]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 IPARAFQKVP ELLGPEDQLV LGPDQPEDEV GESSEEEPVE SRAQRLRRTG LQKVQSLKRA  60
   61 LSSRKAAQPT PVKPPRVGPV RSSEGPSEGQ PAAQPEMESE LETALEPEPP QPTKEDPEKP 120
  121 VLQIESAA

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle