YRC Public Data Repository - Protein Structure Prediction

Protein:	RL16A_SCHPO
Organism:	Schizosaccharomyces pombe 972h-
Length:	197 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RL16A_SCHPO.

Description	E-value	Query Range	Subject Range
gi\|115389400, gi... - gi\|115389400\|ref\|XP_001212205.1\| serine palmitoyltransferase 2 [Aspergillus terreus NIH2624], gi\|114...	282.0	[0..2]	[197..693]
RL16B_SCHPO - 60S ribosomal protein L16-B OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rpl1601 PE=1 S... rpl1601 - 60S ribosomal protein L13 /L16	264.0	[0..1]	[197..1]
gi\|114678465 - gi\|114678465\|ref\|XP_001172778.1\| PREDICTED: similar to 23 kD highly basic protein isoform 6 [Pan tro...	258.0	[0..1]	[176..1]
gi\|3299816, gi\|1... - gi\|3299816\|dbj\|BAA31555.1\| ribosomal protein rp22 homolog [Schizosaccharomyces pombe], pir\|\|T43381 r...	256.0	[0..5]	[197..1]
gi\|77404207, gi\|... - gi\|77404207\|ref\|NP_775462.2\| ribosomal protein L13A [Rattus norvegicus], gi\|55778547\|gb\|AAH86382.1\| ...	255.0	[0..1]	[195..1]
RL13A_MACFA - 60S ribosomal protein L13a OS=Macaca fascicularis GN=RPL13A PE=2 SV=3	255.0	[0..1]	[195..1]
gi\|239744829, gi... - gi\|55662556\|emb\|CAH73036.1\| novel protein similar to ribosomal protein L13a RPL13A [Homo sapiens], g...	255.0	[0..1]	[195..1]
RL13A_BOVIN - 60S ribosomal protein L13a OS=Bos taurus GN=RPL13A PE=2 SV=3	255.0	[0..1]	[195..1]

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Predicted Domain #1

Region A:
Residues: [1-197]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSEFQKVVVI DAKGHLLGRL ASVVAKQLLG GQKVVVVRCE ELNISGHFFR NKLKYLAYLR  60
   61 KACRYNPSRG AFHFRAPSRI FQKAVRGMLP HKTARGQAAL EHLQAVEGIP PPFDKQKRVV 120
  121 VPAALRVLRL KPGRKYCTVG RLSSEVGWKY SDIVSKLEER RKVKSAAFYQ AKLAKQKKIA 180
  181 SAKAASSVNG KLAEFGY

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	48.045757
Match:	1s1iM
Description:	Structure of the ribosomal 80S-eEF2-sordarin complex from yeast obtained by docking atomic models for RNA and protein components into a 11.7 A cryo-EM map. This file, 1S1I, Contains 60S subunit. The 40S Ribosomal Subunit Is In File 1S1H.
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits