YRC Public Data Repository - Protein Structure Prediction

Protein:	RM07_SCHPO
Organism:	Schizosaccharomyces pombe 972h-
Length:	287 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RM07_SCHPO.

Description	E-value	Query Range	Subject Range
gi\|46125911, gi\|... - gi\|46125911\|ref\|XP_387509.1\| hypothetical protein FG07333.1 [Gibberella zeae PH-1], gi\|42554723\|gb\|E...	292.0	[0..23]	[277..92]
gi\|28922248, gi\|... - gi\|32405796\|ref\|XP_323511.1\| hypothetical protein ( (AL513445) related to ribosomal protein L5 precu... gi\|85099166 - gi\|85099166\|ref\|XP_960729.1\| hypothetical protein NCU04171 [Neurospora crassa OR74A]	289.0	[0..23]	[277..96]
gi\|44980755, gi\|... - gi\|45185119\|ref\|NP_982836.1\| ABL111Cp [Ashbya gossypii ATCC 10895], gi\|44980755\|gb\|AAS50660.1\| ABL11... gi\|44980755 - gi\|44980755\|gb\|AAS50660.1\| ABL111Cp [Ashbya gossypii ATCC 10895]	285.0	[0..23]	[282..35]
gi\|88178435, gi\|... - gi\|88178435\|gb\|EAQ85903.1\| hypothetical protein CHGG_07156 [Chaetomium globosum CBS 148.51], gi\|1161...	285.0	[0..23]	[277..86]
RM07_YEAST - 54S ribosomal protein L7, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=... MRPL7 - Mitochondrial ribosomal protein of the large subunit gi\|151942214 - gi\|151942214\|gb\|EDN60570.1\| YmL5/7 [Saccharomyces cerevisiae YJM789]	278.0	[0..23]	[282..37]
gi\|39943946, gi\|... - gi\|39943946\|ref\|XP_361510.1\| hypothetical protein MGG_03984 [Magnaporthe grisea 70-15], gb\|EAA50225....	278.0	[0..23]	[277..100]
RL5_GEOKA - 50S ribosomal protein L5 OS=Geobacillus kaustophilus GN=rplE PE=3 SV=1 RL5_GEOKA - 50S ribosomal protein L5 OS=Geobacillus kaustophilus (strain HTA426) GN=rplE PE=3 SV=1	270.0	[0..97]	[279..3]
RL5_MOOTA - 50S ribosomal protein L5 OS=Moorella thermoacetica (strain ATCC 39073) GN=rplE PE=3 SV=1	270.0	[0..97]	[280..3]
RL5_CHESB - 50S ribosomal protein L5 OS=Chelativorans sp. (strain BNC1) GN=rplE PE=3 SV=1	269.0	[0..93]	[278..5]

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Predicted Domain #1

Region A:
Residues: [1-96]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLGIRKNIRI SVNFLQRRTI TVKQKLGKNR PLPGWDPNSE YFRPGPTMLN RLQEHLHDTI  60
   61 LPDVLAASYR HDIDTALSTD EHTQKDRLPR WIGDNP

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [97-287]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 YYKNRPPQKM RGNKPLLPVK ESVNPKNLPS ISKVVVSTMH KEALVDKTQL LSTMMAFRSI  60
   61 TGLQPEIVYA RKDVSPWKLR SGVPVGVKVT LTGESMYTFL SILSELVLPQ LHDFKGLSPT 120
  121 SGDQTGNISF GLPSEVMPLF PQIEAVYEMY PHSLPGFNVN ITTNSKDTRL ARFFVSSLIP 180
  181 FTDGNKEGYV G

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	72.0
Match:	1iq4A
Description:	Ribosomal protein L5
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
structural constituent of ribosome	10.0077098174023	bayes_pls_golite062009
structural molecule activity	9.43117206427219	bayes_pls_golite062009
binding	1.22985833191636	bayes_pls_golite062009
protein binding	0.551360246680731	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: