YRC Public Data Repository - Protein Structure Prediction

Protein:	SDHF3_SCHPO
Organism:	Schizosaccharomyces pombe 972h-
Length:	115 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SDHF3_SCHPO.

Description	E-value	Query Range	Subject Range
gi\|46098065, gi\|... - gi\|71009878\|ref\|XP_758323.1\| hypothetical protein UM02176.1 [Ustilago maydis 521], ref\|XP_399791.1\| ...	179.0	[0..2]	[111..93]
SDHF3_ASHGO - Succinate dehydrogenase assembly factor 3, mitochondrial OS=Ashbya gossypii (strain ATCC 10895 / CBS... ACN9_ASHGO - Acetate non-utilizing protein 9, mitochondrial OS=Ashbya gossypii GN=ACN9 PE=3 SV=1	174.0	[0..7]	[112..11]
ACN9_NEUCR - Acetate non-utilizing protein 9, mitochondrial OS=Neurospora crassa GN=acn-9 PE=3 SV=1 SDHF3_NEUCR - Succinate dehydrogenase assembly factor 3, mitochondrial OS=Neurospora crassa (strain ATCC 24698 / 7...	172.0	[0..14]	[112..33]
ACN9_USTMA - Acetate non-utilizing protein 9, mitochondrial OS=Ustilago maydis GN=ACN9 PE=3 SV=2 SDHF3_USTMA - Succinate dehydrogenase assembly factor 3, mitochondrial OS=Ustilago maydis (strain 521 / FGSC 9021)...	171.0	[0..2]	[111..29]
ACN9_GIBZE - Acetate non-utilizing protein 9, mitochondrial OS=Gibberella zeae GN=ACN9 PE=3 SV=1 SDHF3_GIBZE - Succinate dehydrogenase assembly factor 3, mitochondrial OS=Gibberella zeae (strain PH-1 / ATCC MYA-...	167.0	[0..14]	[113..25]
SDHF3_CANAL - Succinate dehydrogenase assembly factor 3, mitochondrial OS=Candida albicans (strain SC5314 / ATCC M... ACN9_CANAL - Acetate non-utilizing protein 9, mitochondrial OS=Candida albicans GN=ACN9 PE=3 SV=1	164.0	[0..9]	[112..16]
ACN9_EMENI - Acetate non-utilizing protein 9, mitochondrial OS=Emericella nidulans GN=acn9 PE=3 SV=1 SDHF3_EMENI - Succinate dehydrogenase assembly factor 3, mitochondrial OS=Emericella nidulans (strain FGSC A4 / AT...	161.0	[0..14]	[111..27]
SDHF3_DEBHA - Succinate dehydrogenase assembly factor 3, mitochondrial OS=Debaryomyces hansenii (strain ATCC 36239... ACN9_DEBHA - Acetate non-utilizing protein 9, mitochondrial OS=Debaryomyces hansenii GN=ACN9 PE=3 SV=1	156.0	[0..9]	[115..16]
gi\|17221344 - gi\|17221344\|emb\|CAC85376.1\| hypothetical protein [Kluyveromyces lactis]	155.0	[0..8]	[113..23]
SDHF3_KLULA - Succinate dehydrogenase assembly factor 3, mitochondrial OS=Kluyveromyces lactis (strain ATCC 8585 /... ACN9_KLULA - Acetate non-utilizing protein 9, mitochondrial OS=Kluyveromyces lactis GN=ACN9 PE=3 SV=1	154.0	[0..8]	[113..23]

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Predicted Domain #1

Region A:
Residues: [1-115]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNNITKLMKQ KNILTPPLPL YRRVLRAHRY HLGAEERALG DEYVKAEFRR HRNVTNPLHL  60
   61 VGFLSSWERY ADALENESWK QEKYSNTDLL ESLNDQQIGQ LYELSKALQE QKKSE

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	60.443697
Match:	PF05882.4
Description:	No description for PF05882.4 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits