| Protein: | YKL1_SCHPO |
| Organism: | Schizosaccharomyces pombe 972h- |
| Length: | 1220 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YKL1_SCHPO.
| Description | E-value | Query Range |
Subject Range |
|
|
469.0 | [0..4] | [1108..473] |
|
|
457.0 | [0..11] | [1203..233] |
|
|
437.0 | [0..2] | [1207..52] |
|
|
431.0 | [0..2] | [1202..1247] |
|
Region A: Residues: [1-612] |
1 11 21 31 41 51
| | | | | |
1 MAVSRLLILI CLYSFVTFAY PKVTQDYRNH LPIKFAKRSE VTPNTSLAQC PKYVTVYSSG 60
61 SSHYISTIYP VNKTHHTEYT TLTDGSIDTY TITAKTDTGT DVVVVETSAN TITTTLYSGS 120
121 LEFTTTLDSA NGTTPATIEV VEPAAGTVTT TIYSGTTPFN TTLASATDTV PGTVEVVEPE 180
181 AGTVTTTVYS GTQEYTTTLA TASGTVSGTV EVVDTAAGTV TTTIYSGTTP FNTTLASATD 240
241 TVPGTVEVVE PEAGTVTTTV YSGTQEYTTT LATASGTVSG TVEVVDTAAG TVTTTIYSGT 300
301 TPFNTTLASA TDTVPGTVEV VEPEAGTVTT TVYSGTQEYT TTLATASGTV SGTVEVVDTA 360
361 AGTVTTTIYS GTTPFNTTLA SATDTVPGTV EVVEPEAGTV TTTVYSGTQE YTTTLATASG 420
421 TVSGTVEVVD TAAGTVTTTI YSGTTPFNTT LASATDTVPG TVEVVEPEAG TVTTTVYSGT 480
481 QEYTTTLATA SGTVSGTVEV VDTAAGTVTT TIYSGTTPFN TTLASATDTV PGTVEVVEPE 540
541 AGTVTTTVYS GTQEYTTTLA TASGTVSGTV EVVDTAAGTV TTTIYSGTTP FNTTLASATD 600
601 TVPGTVEVVE PE
|
| Detection Method: |  |
| Confidence: | 1.05 |
| Match: | 1pguA |
| Description: | Actin interacting protein 1 |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 2.11008558514596 | bayes_pls_golite062009 |
| protein binding | 1.81988423101674 | bayes_pls_golite062009 |
| receptor binding | 0.504195144574225 | bayes_pls_golite062009 |
| receptor activity | 0.357404862871977 | bayes_pls_golite062009 |
|
Region A: Residues: [613-783] |
1 11 21 31 41 51
| | | | | |
1 AGTVTTTVYS GTQEYTTTLA TASGTVSGTV EVIEPAAGTV TTTVYSGTQE YTTTLATASG 60
61 TVSGTVEVIE PAAGTVTSTV YSGTQEYTTT LATASGTVSG TVEVIEPAAG TVTTTVYSGT 120
121 QEYTTTLATA SGTVSGTVEV IEPAAGTVTT TVYSGSEVYT TTLASASESV P
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [784-1032] |
1 11 21 31 41 51
| | | | | |
1 GTVEVVDPEA GSVTTTIYSG SVEYTTVLAD ASGSVTGTVE VVEPAAGTVT TTVYSGSEVY 60
61 TTTLASASES VPGTVEVVDP EAGSVTTTIY SGSVEYTTVL ADASGSVTGT VEVVEPAAGT 120
121 VTGTLTSGSQ FFTTTIAQAS GSVSGNVEVI EPSGSTVTST IYSGSESFTT TLAVGSGTIP 180
181 GTVEVILPAP TTIYTGTVAT TITYSSSSTP VSTVVVIPTA VCSGVRGLQY AVYNYDISAS 240
241 KSKFCVSSG
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [1033-1144] |
1 11 21 31 41 51
| | | | | |
1 NTDVAAFTQP AYFGSSSLDQ SSPLFTGVLS STAALPEWTS SYYLPDYPPD ATAMESTRCN 60
61 CKAIVYQFFF RVPYTDTYEL NVYNVDDVFY GWFGDKAISG WSNTNYDAYA YW
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.443 | 0.512 | cell surface | d.15.2 | CAD & PB1 domains |
| View | Download | 0.567 | 0.011 | cell surface | d.14.1 | Ribosomal protein S5 domain 2-like |
| View | Download | 0.534 | 0.002 | cell surface | d.131.1 | DNA clamp |
| View | Download | 0.512 | 0.001 | cell surface | d.52.3 | Prokaryotic type KH domain (KH-domain type II) |
| View | Download | 0.446 | N/A | N/A | d.131.1 | DNA clamp |
|
Region A: Residues: [1145-1220] |
1 11 21 31 41 51
| | | | | |
1 HVTTGQTGMG SFSMGTLTQG SFLPIRLIVA NGGGKGGFNF DFSSSTDTYA ATSYAYTATC 60
61 TQSFLPFGLG NGGIDN
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.793 | d.50.2 | Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain |
| View | Download | 0.737 | b.61.4 | Quinohemoprotein amine dehydrogenase A chain, domain 3 |
| View | Download | 0.734 | b.61.4 | Quinohemoprotein amine dehydrogenase A chain, domain 3 |
| View | Download | 0.711 | b.61.4 | Quinohemoprotein amine dehydrogenase A chain, domain 3 |
| View | Download | 0.692 | d.50.2 | Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain |
