YRC Public Data Repository - Protein Structure Prediction

Protein:	SLX1_SCHPO
Organism:	Schizosaccharomyces pombe 972h-
Length:	271 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SLX1_SCHPO.

Description	E-value	Query Range	Subject Range
GIYD2, GIYD1 - GIY-YIG domain containing 2, GIY-YIG domain containing 1	322.0	[0..6]	[266..13]
gi\|109128179 - gi\|109128179\|ref\|XP_001109511.1\| PREDICTED: similar to GIY-YIG domain containing 2 isoform 1 isoform...	320.0	[0..6]	[266..13]
SLX1_MOUSE - Structure-specific endonuclease subunit SLX1 OS=Mus musculus GN=Slx1b PE=2 SV=1	319.0	[0..6]	[266..10]
SLX1_RAT - Structure-specific endonuclease subunit SLX1 OS=Rattus norvegicus GN=Slx1b PE=2 SV=1	309.0	[0..6]	[266..10]
gi\|73958514 - gi\|73958514\|ref\|XP_849594.1\| PREDICTED: similar to GIY-YIG domain containing 2 isoform 1 isoform 1 [...	284.0	[0..5]	[266..12]
SLX1_BOVIN - Structure-specific endonuclease subunit SLX1 OS=Bos taurus GN=SLX1A PE=2 SV=1	278.0	[0..6]	[266..6]
SLX1_XENLA - Structure-specific endonuclease subunit slx1 OS=Xenopus laevis GN=slx1a PE=2 SV=1	247.0	[0..6]	[265..8]
gi\|28381101, gi\|... - gi\|28571506\|ref\|NP_649484.2\| CG18271 [Drosophila melanogaster], gi\|28381101\|gb\|AAF52110.2\| CG18271 [...	238.0	[0..5]	[255..32]
giyd-1 - status:Partially_confirmed UniProt:P91351 protein_id:AAB37804.1	237.0	[0..6]	[242..172]

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Predicted Domain #1

Region A:
Residues: [1-96]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDLCNFYCCY LLKSNRTQSS GAVYIGSTPD PPRRLRQHNG EIVGGASKTK HGRPWSISCL  60
   61 VYGFPNKVSA LKFEWNWQNL GISRYTKDCD FRSKKQ

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	22.39794
Match:	1zg2A
Description:	Solution NMR structure of the UPF0213 protein BH0048 from Bacillus halodurans. Northeast Structural Genomics target BhR2.
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [97-271]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KTIMYCLKGL KHLVDSDTWR RWPLNITFLN KTAFSKWNQL GKTYGNINVY FDEEWLNGFH  60
   61 EKVIQKTYDH KLCLRKTISE PVKCNLCYEC IESDELRANC PFTDCNSINH LTCLASSFLT 120
  121 EECQVLPIEG MCTKCKRVLR WREFLSTVFT TSLETDERDF ESENRIEIID LELEK

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	2.71
Match:	1jm7A
Description:	brca1 RING domain
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits