YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|109075126, gi...
Organism:	Macaca mulatta
Length:	193 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|109075126, gi....

Description	E-value	Query Range	Subject Range
gi\|114595378, gi... - gi\|114595382\|ref\|XP_001168002.1\| PREDICTED: DNA-damage-inducible transcript 4-like isoform 2 [Pan tr...	2.0E-88	[1..193]	[1..193]
gi\|17432247 - gi\|17432247\|gb\|AAL39013.1\|AF327512_1 SMHS1 [Mus musculus]	2.0E-87	[1..191]	[1..191]
DDT4L_PONAB - DNA damage-inducible transcript 4-like protein OS=Pongo abelii GN=DDIT4L PE=2 SV=1 gi\|55730376 - gi\|55730376\|emb\|CAH91910.1\| hypothetical protein [Pongo abelii]	2.0E-86	[1..193]	[1..193]
DDT4L_RAT - DNA damage-inducible transcript 4-like protein OS=Rattus norvegicus GN=Ddit4l PE=2 SV=1	3.0E-84	[1..191]	[1..191]
gi\|74002280 - gi\|74002280\|ref\|XP_544999.2\| PREDICTED: similar to DNA-damage-inducible transcript 4-like [Canis fam...	6.0E-84	[1..191]	[1..191]
gi\|76619503 - gi\|76619503\|ref\|XP_588133.2\| PREDICTED: similar to DNA-damage-inducible transcript 4-like, partial [...	4.0E-73	[1..170]	[1..170]
gi\|109089524 - gi\|109089524\|ref\|XP_001105457.1\| PREDICTED: similar to RTP801 [Macaca mulatta]	1.0E-71	[6..183]	[475..650]

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Predicted Domain #1

Region A:
Residues: [1-193]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVATGSLSSK NPASISELLD CGYHPESLLS DFDYWDYVVP EPNLNEVIFE ESTCQNLVKM  60
   61 LENCLSKSKQ TKLGCSKVLV PEKLTQRIAQ DVLRLSSTEP CGLRGCVMHV NLEIENVCKK 120
  121 LDRIVCDSSV VPTFELTLVF KQENCSWTSF RDFFFSRGRF SSGFRRTLIL SSGFRLVKKK 180
  181 LYSLIGTTVI EGS

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	73.677781
Match:	PF07809.2
Description:	No description for PF07809.2 was found.

Shown below is our most confident prediction for this domain.
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Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits