YRC Public Data Repository - Protein Structure Prediction

Protein:	YBQ2_SCHPO
Organism:	Schizosaccharomyces pombe 972h-
Length:	454 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YBQ2_SCHPO.

Description	E-value	Query Range	Subject Range
gi\|28918134, gi\|... - gi\|32406442\|ref\|XP_323834.1\| hypothetical protein [Neurospora crassa], gi\|28918134\|gb\|EAA27814.1\| hy... gi\|85083111 - gi\|85083111\|ref\|XP_957050.1\| hypothetical protein NCU04481 [Neurospora crassa OR74A]	359.0	[0..32]	[452..94]
N2B_HAEIR - Putative ATPase N2B OS=Haematobia irritans PE=2 SV=1	351.0	[0..20]	[453..21]
gi\|79325316, gi\|... - gi\|79325316\|ref\|NP_001031737.1\| AFG1-like ATPase family protein [Arabidopsis thaliana], gi\|56790192\|...	349.0	[0..36]	[453..62]
gi\|40742485, gi\|... - gi\|67541731\|ref\|XP_664633.1\| hypothetical protein AN7029.2 [Aspergillus nidulans FGSC A4], ref\|XP_41...	343.0	[0..5]	[452..71]
LACE1 - lactation elevated 1 gi\|114608763 - gi\|114608763\|ref\|XP_518672.2\| PREDICTED: lactation elevated 1 [Pan troglodytes]	343.0	[0..2]	[451..50]
gi\|50744610 - gi\|50744610\|ref\|XP_419799.1\| PREDICTED: similar to lactation elevated 1; CG8520 gene product; lactat...	341.0	[0..36]	[452..265]
gi\|119114010, gi... - gi\|119114010\|ref\|XP_318985.3\| ENSANGP00000014807 [Anopheles gambiae str. PEST], gi\|116118210\|gb\|EAA1...	340.0	[0..35]	[453..3]
gi\|83775352 - gi\|83775352\|dbj\|BAE65474.1\| unnamed protein product [Aspergillus oryzae] gi\|169784291 - gi\|169784291\|ref\|XP_001826607.1\| hypothetical protein [Aspergillus oryzae RIB40]	340.0	[0..36]	[452..102]
gi\|21668096, gi\|... - gi\|21919411\|ref\|NP_665686.1\| lactation elevated 1 [Mus musculus], gi\|21668096\|gb\|AAM74227.1\|AF520417...	337.0	[0..2]	[451..50]

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Predicted Domain #1

Region A:
Residues: [1-360]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLQVLRVSAP CFAFVDTIGS IGVCRVVRFT TFHNTPIEVY NKKVNDGVWK RDPYQETAVK  60
   61 AINRLYTELE SYTQPPITQD SMPAEKGSIL SWISPLKKMF SRKKSPTLTS SLPVPGMPKG 120
  121 IYLYGDVGCG KTALMDLFYH NLPPNVTRSQ RIHFHAFMMQ VHRTSHDLQD RYGFEIDFID 180
  181 HIASGIAKET TVLCFDELQV TDVADALLLR RLFEALMKYG VVIFITSNRA PSDLYKNGIQ 240
  241 RESFIPCIKL LEHRLQVICL DSPNDYRRLK SKTEDTYLYP ANSPEVKKAL ENWFLCYADE 300
  301 KDPAHQDEVE VFGRKIIVPK ASGNVAWFTF EQLCGEPKSA ADYLSLASRY HVFIVSDIPK 360
  361

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	59.69897
Match:	1oz4A
Description:	VCP/p97
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [361-454]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LSIESKDLIH RFITFIDALY DTHGKLILSS EVPVQEIYPT APSEVLSSTA DPAAKGKIES  60
   61 HYHGAFGGIE EVFTFTRCLS RLSEMKKQSW IHSP

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits