YRC Public Data Repository - Protein Structure Prediction

Protein:	YDR2_SCHPO
Organism:	Schizosaccharomyces pombe 972h-
Length:	222 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YDR2_SCHPO.

Description	E-value	Query Range	Subject Range
gi\|48729092, gi\|... - gi\|77456426\|ref\|YP_345931.1\| hypothetical protein Pfl01_0198 [Pseudomonas fluorescens Pf0-1], gi\|773...	200.0	[0..1]	[177..1]
gi\|28850778, gi\|... - gi\|28867543\|ref\|NP_790162.1\| hypothetical protein PSPTO_0312 [Pseudomonas syringae pv. tomato str. D... tr\|Q88AS4\|Q88AS4... - Uncharacterized protein OS=Pseudomonas syringae pv. tomato (strain DC3000) GN=PSPTO_0312 PE=4 SV=1	200.0	[0..1]	[177..1]
gi\|6730712, gi\|2... - gi\|6730712\|gb\|AAF27107.1\|AC011809_16 Unknown protein [Arabidopsis thaliana], pir\|\|A86321 F6A14.17 pr...	199.0	[0..4]	[179..10]
gi\|71734241, gi\|... - gi\|71734241\|ref\|YP_272535.1\| hypothetical protein PSPPH_0230 [Pseudomonas syringae pv. phaseolicola ...	199.0	[0..1]	[177..1]
gi\|66043512, gi\|... - gi\|66043512\|ref\|YP_233353.1\| hypothetical protein Psyr_0242 [Pseudomonas syringae pv. syringae B728a...	199.0	[0..1]	[173..1]
gi\|91780041, gi\|... - gi\|91780041\|ref\|YP_555249.1\| hypothetical protein Bxe_B0026 [Burkholderia xenovorans LB400], gi\|9169...	195.0	[0..1]	[174..1]
gi\|38567177 - gi\|38567177\|emb\|CAE76470.1\| conserved hypothetical protein [Neurospora crassa]	195.0	[0..4]	[171..5]
gi\|46108674, gi\|... - gi\|46108674\|ref\|XP_381395.1\| hypothetical protein FG01219.1 [Gibberella zeae PH-1], gi\|42544432\|gb\|E...	194.0	[0..4]	[179..5]
gi\|2982301 - gi\|2982301\|gb\|AAC32136.1\| YGL010w-like protein [Picea mariana]	194.0	[0..4]	[179..8]
gi\|84362695 - gi\|84362695\|ref\|ZP_00987310.1\| COG4539: Predicted membrane protein [Burkholderia dolosa AUO158]	193.0	[0..1]	[171..1]

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Predicted Domain #1

Region A:
Residues: [1-222]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTYLSRSYSF YAAYHSNPVN IKIHQVCIPL LLLTALVLLH NFVITLINSK LQINVAHLVG  60
   61 LAYQIFYVTL DPLDGLLYSP VLYLFSYILP SKLFTIFSRS LVNRSAAVVH VICWILQFIG 120
  121 HGVFEKRKPA LLDNLIQSLF IAPLFAFLET GPFVGYYPSV VSKIRANIKL KDVGENYPNL 180
  181 SEFLFPPSMV EDAVSGVVED ASQLSYCIRP LRLSDIDDGI VF

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	82.30103
Match:	PF06127.2
Description:	No description for PF06127.2 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits