YRC Public Data Repository - Protein Structure Prediction

Protein:	SPIN1_MOUSE
Organism:	Mus musculus
Length:	262 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPIN1_MOUSE.

Description	E-value	Query Range	Subject Range
gi\|61370806, gi\|... - gi\|61370806\|gb\|AAX43555.1\| spindlin [synthetic construct], gi\|61370800\|gb\|AAX43554.1\| spindlin [synt...	490.0	[0..1]	[262..1]
SPIN1_PONPY - Spindlin-1 - Pongo pygmaeus (Orangutan) SPIN1_PONAB - Spindlin-1 OS=Pongo abelii GN=SPIN1 PE=2 SV=1 SPIN1 - spindlin 1 ENSPTRT00000039009 - null gi\|123993721, gi... - gi\|61361087\|gb\|AAX41988.1\| spindlin [synthetic construct], gi\|124000581\|gb\|ABM87799.1\| spindlin [syn... ENSOCUP000000102... - pep:novel chromosome:oryCun2:1:79075764:79109755:-1 gene:ENSOCUG00000011880 transcript:ENSOCUT000000...	489.0	[0..1]	[262..1]
gi\|57036090 - gi\|57036090\|ref\|XP_533554.1\| PREDICTED: similar to spindlin isoform 2 isoform 1 [Canis familiaris] gi\|76668394 - gi\|76668394\|ref\|XP_614403.2\| PREDICTED: similar to spindlin isoform 1 [Bos taurus]	488.0	[0..1]	[262..1]
SPIN1_RAT - Spindlin-1 OS=Rattus norvegicus GN=Spin1 PE=2 SV=1	487.0	[0..1]	[262..1]
SPINZ_CHICK - Spindlin-Z OS=Gallus gallus GN=SPINZ PE=2 SV=1 gi\|542154818\|ref... - PREDICTED: spindlin-Z-like [Zonotrichia albicollis] gi\|224088679 - gi\|224088679\|ref\|XP_002193394.1\| PREDICTED: similar to spindlin [Taeniopygia guttata]	486.0	[0..1]	[262..1]
gi\|76668402 - gi\|76668402\|ref\|XP_879536.1\| PREDICTED: similar to spindlin isoform 2 isoform 5 [Bos taurus]	483.0	[0..1]	[262..1]
gi\|163915448, gi... - gi\|62860014\|ref\|NP_001017097.1\| spindlin [Xenopus (Silurana) tropicalis], gi\|163915448\|gb\|AAI57271.1...	483.0	[0..1]	[262..1]
gi\|148234599, gi... - gi\|66910801\|gb\|AAH97748.1\| MGC115436 protein [Xenopus laevis], gi\|148234599\|ref\|NP_001089504.1\| hypo...	483.0	[0..1]	[262..1]
gi\|109112088 - gi\|109112088\|ref\|XP_001088482.1\| PREDICTED: similar to spindlin isoform 2 isoform 2 [Macaca mulatta]	482.0	[0..1]	[262..1]

Back

Predicted Domain #1

Region A:
Residues: [1-262]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKTPFGKTPG QRSRADAGHA GVSANMMKKR TSHKKHRTSV GPSKPVSQPR RNIVGCRIQH  60
   61 GWREGNGPVT QWKGTVLDQV PVNPSLYLIK YDGFDCVYGL ELNKDERVSA LEVLPDRVAT 120
  121 SRISDAHLAD TMIGKAVEHM FETEDGSKDE WRGMVLARAP VMNTWFYITY EKDPVLYMYQ 180
  181 LLDDYKEGDL RIMPDSNDSP PAEREPGEVV DSLVGKQVEY AKEDGSKRTG MVIHQVEAKP 240
  241 SVYFIKFDDD FHIYVYDLVK TS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	125.0
Match:	2ns2A
Description:	No description for 2ns2A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits