YRC Public Data Repository - Protein Structure Prediction

Protein:	SYNC_SCHPO
Organism:	Schizosaccharomyces pombe 972h-
Length:	568 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SYNC_SCHPO.

Description	E-value	Query Range	Subject Range
gi\|74196771 - gi\|74196771\|dbj\|BAE43117.1\| unnamed protein product [Mus musculus]	505.0	[0..11]	[568..9]
gi\|53132771, gi\|... - gi\|71897197\|ref\|NP_001026571.1\| asparaginyl-tRNA synthetase [Gallus gallus], gi\|53132771\|emb\|CAG3193...	498.0	[0..1]	[568..1]
gi\|73945455 - gi\|73945455\|ref\|XP_849060.1\| PREDICTED: similar to Asparaginyl-tRNA synthetase, cytoplasmic (Asparag...	496.0	[0..11]	[568..9]
SYNC_BOVIN - Asparagine--tRNA ligase, cytoplasmic OS=Bos taurus GN=NARS PE=2 SV=3	495.0	[0..16]	[568..14]
gi\|114673281, gi... - gi\|114673281\|ref\|XP_001139185.1\| PREDICTED: asparaginyl-tRNA synthetase isoform 4 [Pan troglodytes],...	490.0	[0..16]	[568..3]
NARS - asparaginyl-tRNA synthetase	490.0	[0..16]	[568..3]
gi\|46433497, gi\|... - gi\|77023058\|ref\|XP_888973.1\| hypothetical protein CaO19_6702 [Candida albicans SC5314], gi\|68488042\|... gi\|76573786 - gi\|76573786\|dbj\|BAE44870.1\| hypothetical protein [Candida albicans]	484.0	[0..18]	[568..4]

Back

Predicted Domain #1

Region A:
Residues: [1-120]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGLESKVSD MKIKSDVVFY IDEASGNDET GNGSQTSPFK TAIHALETDA NCTIFVKKNG  60
   61 SEEFEPITTN ALKKAKKGVE QAAKKKAKAA EAEAAAAARA AAAKEAEAKR LEAAKNIVLK 120
  121

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.35
Match:	1ru4A
Description:	Crystal structure of pectate lyase Pel9A
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [121-568]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EPKDAPAAKK IAIIDSTNFR DSRVRVNGWV HRMRTQKGII FIILRDGTGF LQCVLSGKVY  60
   61 DRASYDFINL GPESTVCLYG VIKELPEGKS APGNHELVVD YYQILHAAPT GEEAFTNRLN 120
  121 AEAEPSYLLD QRHLVIRGET ASSVLKVRAR ALRAMRDTFE NLKMTEVTPP CMVQTQVEGG 180
  181 ATLFKFNYYG QDAYLTQSSQ LYLEAALPAL GSVYTIQESF RAEKSLTRRH LSEFTHVEFE 240
  241 LPFVNFGEFL EIIEEFICQT IDRLLDDPIA TPLIKQLNPD FVKPSRPFMR LSYEDAIKYL 300
  301 NEHNILTPEG EQHKFGDDIA EAAERKMTDQ INRPIFLTYF PLEIKSFYMK RVVDRPELTE 360
  361 SVDCLMPNVG EIVGGSMRIS DIQELLAAYK REGIDPAPYY WFTEQRKYGT TEHGGCGLGL 420
  421 ERFLAWLCDR YTVRECCLFP RFTERCTP

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	112.0
Match:	1x54A
Description:	No description for 1x54A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits