YRC Public Data Repository - Protein Structure Prediction

Protein:	FGF6_MOUSE
Organism:	Mus musculus
Length:	208 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for FGF6_MOUSE.

Description	E-value	Query Range	Subject Range
gi\|57107089 - gi\|57107089\|ref\|XP_543862.1\| PREDICTED: similar to fibroblast growth factor 6 isoform 1 [Canis famil...	254.0	[0..1]	[208..1]
FGF6 - fibroblast growth factor 6	254.0	[0..1]	[208..1]
gi\|149049365, gi... - gi\|18777759\|ref\|NP_571983.1\| fibroblast growth factor 6 [Rattus norvegicus], gi\|18652949\|dbj\|BAB8470...	254.0	[0..1]	[208..1]
gi\|109095116 - gi\|109095116\|ref\|XP_001099809.1\| PREDICTED: fibroblast growth factor 6 [Macaca mulatta]	254.0	[0..1]	[208..1]
gi\|114642913 - gi\|114642913\|ref\|XP_001157123.1\| PREDICTED: fibroblast growth factor 6 [Pan troglodytes]	253.0	[0..1]	[208..1]
gi\|61835668 - gi\|61835668\|ref\|XP_593127.1\| PREDICTED: similar to fibroblast growth factor [Bos taurus]	244.0	[0..1]	[208..1]
gi\|56417377 - gi\|56417377\|gb\|AAV90630.1\| FGF6 [Dicentrarchus labrax]	237.0	[0..1]	[208..1]
gi\|3980190 - gi\|3980190\|emb\|CAA76422.1\| fibroblast growth factor 6-related protein [Oncorhynchus mykiss]	235.0	[0..1]	[208..1]

Back

Predicted Domain #1

Region A:
Residues: [1-208]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MALGQRLFIT MSRGAGRVQG TLQALVFLGV LVGMVVPSPA GARANGTLLD SRGWGTLLSR  60
   61 SRAGLAGEIS GVNWESGYLV GIKRQRRLYC NVGIGFHLQV PPDGRISGTH EENPYSLLEI 120
  121 STVERGVVSL FGVKSALFIA MNSKGRLYTT PSFHDECKFR ETLLPNNYNA YESDLYRGTY 180
  181 IALSKYGRVK RGSKVSPIMT VTHFLPRI

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	44.0
Match:	1ijtA
Description:	Fibroblast growth factor 4 (FGF4)
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits