YRC Public Data Repository - Protein Structure Prediction

Protein:	SYLC_SCHPO
Organism:	Schizosaccharomyces pombe 972h-
Length:	1111 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SYLC_SCHPO.

Description	E-value	Query Range	Subject Range
gi\|88925416, gi\|... - gi\|88944905\|ref\|ZP_01148127.1\| Valyl-tRNA synthetase, class Ia [Desulfotomaculum reducens MI-1], gi\|...	686.0	[0..18]	[1054..1]
gi\|83589396, gi\|... - gi\|83589396\|ref\|YP_429405.1\| valyl-tRNA synthetase [Moorella thermoacetica ATCC 39073], gi\|83572310\|...	686.0	[0..23]	[1054..4]
SYV_CARHZ - Valine--tRNA ligase OS=Carboxydothermus hydrogenoformans (strain ATCC BAA-161 / DSM 6008 / Z-2901) G...	682.0	[0..19]	[1054..1]
gi\|109639585, gi... - gi\|109649187\|ref\|ZP_01373079.1\| valyl-tRNA synthetase [Desulfitobacterium hafniense DCB-2], gi\|10963...	680.0	[0..23]	[1058..1]
gi\|2635274, gi\|1... - gi\|2635274\|emb\|CAB14769.1\| valyl-tRNA synthetase [Bacillus subtilis subsp. subtilis str. 168], gi\|16... SYV_BACSU - Valyl-tRNA synthetase OS=Bacillus subtilis GN=valS PE=3 SV=2	680.0	[0..20]	[1057..5]
gi\|89895934, gi\|... - gi\|89895934\|ref\|YP_519421.1\| valyl-tRNA synthetase [Desulfitobacterium hafniense Y51], gi\|89335382\|d...	678.0	[0..22]	[1050..6]
gi\|62088048 - gi\|62088048\|dbj\|BAD92471.1\| Isoleucyl-tRNA synthetase, cytoplasmic variant [Homo sapiens]	676.0	[0..17]	[1098..16]
gi\|109505545, gi... - gi\|208022685\|ref\|NP_001094042.1\| isoleucine tRNA synthetase [Rattus norvegicus], gi\|149045018\|gb\|EDL...	676.0	[0..19]	[1098..1]
gi\|118580003, gi... - gi\|71836562\|ref\|ZP_00676330.1\| Valyl-tRNA synthetase, class Ia [Pelobacter propionicus DSM 2379], gi...	676.0	[0..19]	[1053..1]

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Predicted Domain #1

Region A:
Residues: [1-1111]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATTEPSVEQ LETKTAKLKL ENTTKRDTLI ELEKKYQQKW QEEKAFEVDA PLEDVPIDEL  60
   61 RKKYPKFFGN MPYPYMNGAL HLGHAFTLSK VEFTTAFERL NGKRVLFPMG FHCTGMPICA 120
  121 SADRLSREIE MFGPSFDVPE EKEEEVEVEV KTPNAREDVT KHSGKKSKAA AKTAAVKYQF 180
  181 QIMESLGVPR TEIHKFADAK YWLSYFPPLC QRDCTEFGLG IDWRRSFITT DVNPYYDSFV 240
  241 RWQVNHLHDS GKIKFGERYT VYSIKDGQPC MDHDRKSGEG VGPQEYTGIK MEVLEFPEAA 300
  301 RKALQSIDLS NKKVCMIAAT LRPETMYGQT NCYVGPNITY GIYESNVPNE LFICTRRAAN 360
  361 NMAYQKLSKE RGVVSELGTI KGQDLIGALV NAPLSVHKQV YVLPMETVLA TKGTGVVTSV 420
  421 PSDSPDDFAT LTELRKKAEF YHLNPEWMKY EAVPIIRTPS YGDMCAEFLC KKLKIQSPKD 480
  481 VKQLAQAKEL AYKECFYQGT MIIGKYSGEK VETAKPKVRK ELIDQGLAFV YNEPEGQVIS 540
  541 RSGDDCIVAL CDQWFLDYGE ASWKAVTEKA LDRLNTFSPE VRNGFLKTLD WLSQWACARS 600
  601 YGLGTRLPWD PQFLVESLTD STIYMAYYTI CHLLHSDVYG KVPGALNIKP EQMTPEVWDH 660
  661 VFRQAPKPKN TSISDEALAR LCREFQYFYP FDIRASGKDL VPNHLTFCLY THTAIFDEKY 720
  721 WPKGIRANGH LLMNGEKMSK STGNFMTLHE ATKKFGADAT RLALADAGDT VDDANFEEAL 780
  781 ANSAILRLYT QEAWCKEMME NLDNLRTGPY NFHDKVFENE INQLIESSRE AFSATLFKAA 840
  841 LKSCFYDLQN ARDWYREVTA DRKMHRDLVC RWIETQVLLL ATFAPHWSEH IWLTTLKKPQ 900
  901 SIHVSGRFPQ VSSPVNTALS NSLLYIRTLS RVIREAEAAQ LKRQKKGKGM LFDPSKPKRL 960
  961 TVFVAEKFPE WQAQYVALLQ KYYNESENKF DDKAIISSVD KKEMKRAMPF IQQFKQSVIN1020
 1021 RGEHVSANSI FSRELGFNEL EVLREVKPYL VRNVGIQELR IVLLQKPADK SSAAIGLVES1080
 1081 GSDAGATVEI APNFANTVPG QPTFLFENVS A

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	157.0
Match:	1wz2A
Description:	The crystal structure of Leucyl-tRNA synthetase and tRNA(leucine) complex
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits