YRC Public Data Repository - Protein Structure Prediction

Protein:	SEC22_SCHPO
Organism:	Schizosaccharomyces pombe 972h-
Length:	209 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SEC22_SCHPO.

Description	E-value	Query Range	Subject Range
gi\|113547541, gi... - gi\|215697298\|dbj\|BAG91292.1\| unnamed protein product [Oryza sativa Japonica Group], gi\|115450939\|ref... gi\|125542540 - gi\|125542540\|gb\|EAY88679.1\| hypothetical protein OsI_10154 [Oryza sativa Indica Group]	224.0	[0..8]	[207..14]
VA726_ARATH - Putative vesicle-associated membrane protein 726 OS=Arabidopsis thaliana GN=VAMP726 PE=2 SV=2	222.0	[0..8]	[197..11]
gi\|33347409 - gi\|33347409\|gb\|AAQ15287.1\| synptobrevin-related protein [Pyrus pyrifolia]	217.0	[0..8]	[191..11]
gi\|92878802, gi\|... - gi\|92899155\|gb\|ABE94548.1\| Longin [Medicago truncatula], gi\|92878802\|gb\|ABE85239.1\| Longin-like [Med...	216.0	[0..8]	[192..11]

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Predicted Domain #1

Region A:
Residues: [1-209]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLKLFRLPLA ASVDDESTER NLESHKKQAK LILKRLSPTS EKRASIESGD YTFHYLIDNG  60
   61 ICYLCICEQS YPRKLAFSYL EELAGEFWNS FGEEALQPGL RPYAFVQFDT FMQKSKRVYN 120
  121 TPRANDNLDK LNTELKDVTR VMTKNIEDLL YRGDSLEKMA DLSSDLRYSS AKYKKAARRV 180
  181 NLEALWRQYG PVSIIALLFL IFVYWRFFA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	45.69897
Match:	2nupC
Description:	No description for 2nupC was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits