YRC Public Data Repository - Protein Structure Prediction

Protein:	EPGN_MOUSE
Organism:	Mus musculus
Length:	152 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for EPGN_MOUSE.

Description	E-value	Query Range	Subject Range
gi\|118790718, gi... - gi\|118790718\|ref\|XP_318783.3\| ENSANGP00000004697 [Anopheles gambiae str. PEST], gi\|116118076\|gb\|EAA1...	139.0	[0..2]	[142..1351]
gi\|13929168, gi\|... - gi\|4426629\|gb\|AAD20459.1\| protocadherin [Rattus norvegicus], gi\|13929168\|ref\|NP_114007.1\| FAT tumor ...	135.0	[0..9]	[144..4076]
gi\|82917251, gi\|... - gi\|94383392\|ref\|XP_901497.2\| PREDICTED: fat tumor suppressor homolog isoform 7 [Mus musculus], gi\|82...	134.0	[0..9]	[144..4077]
gi\|66346693 - gi\|66346693\|ref\|NP_005236.2\| FAT tumor suppressor 1 precursor [Homo sapiens]	133.0	[0..9]	[144..4075]
gi\|73979548 - gi\|73979548\|ref\|XP_532835.2\| PREDICTED: similar to FAT tumor suppressor 1 precursor [Canis familiari...	131.0	[0..9]	[144..4078]
gi\|76655579 - gi\|76655579\|ref\|XP_870077.1\| PREDICTED: similar to FAT tumor suppressor 1 isoform 2 [Bos taurus]	130.0	[0..9]	[144..4075]

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Predicted Domain #1

Region A:
Residues: [1-152]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MALGVLIAVC LLFKAMKAAL SEEAEVIPPS TAQQSNWTFN NTEADYIEEP VALKFSHPCL  60
   61 EDHNSYCING ACAFHHELKQ AICRCFTGYT GQRCEHLTLT SYAVDSYEKY IAIGIGVGLL 120
  121 ISAFLAVFYC YIRKRCINLK SPYIICSGGS PL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	13.154902
Match:	1tozA
Description:	NMR structure of the human NOTCH-1 ligand binding region
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits