YRC Public Data Repository - Protein Structure Prediction

Protein:	VATO_MOUSE
Organism:	Mus musculus
Length:	205 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for VATO_MOUSE.

Description	E-value	Query Range	Subject Range
gi\|47212525 - gi\|47212525\|emb\|CAG06230.1\| unnamed protein product [Tetraodon nigroviridis]	204.0	[0..1]	[204..7]
gi\|50751470 - gi\|50751470\|ref\|XP_422414.1\| PREDICTED: similar to ATPase, H+ transporting, V0 subunit B; ATPase, H+...	196.0	[0..22]	[205..170]
gi\|14318761 - gi\|14318761\|gb\|AAH09169.1\| Atp6v0b protein [Mus musculus] gi\|166796501, gi... - ref\|XP_216510.2\| similar to ATPase, H+ transporting, V0 subunit B; ATPase, H+ transporting, lysosoma...	188.0	[0..1]	[205..1]
gi\|20987829 - gi\|20987829\|gb\|AAH30393.1\| ATPase, H+ transporting, lysosomal V0 subunit B [Mus musculus]	188.0	[0..1]	[205..1]
VATO_BOVIN - V-type proton ATPase 21 kDa proteolipid subunit OS=Bos taurus GN=ATP6V0B PE=2 SV=1	185.0	[0..1]	[205..1]
gi\|73977213 - gi\|73977213\|ref\|XP_539645.2\| PREDICTED: similar to ATPase, H+ transporting, lysosomal 21kDa, V0 subu...	185.0	[0..1]	[205..1]
gi\|51704045, gi\|... - gi\|51704045\|gb\|AAH81160.1\| MGC84266 protein [Xenopus laevis], gi\|148228587\|ref\|NP_001087741.1\| MGC84...	184.0	[0..1]	[205..1]
gi\|62858855, gi\|... - gi\|89266781\|emb\|CAJ82500.1\| ATPase, H+ transporting, lysosomal 21kDa, V0 subunit c [Xenopus (Siluran...	183.0	[0..1]	[205..1]
CCDS505.1_1 - null gi\|109003574 - gi\|109003574\|ref\|XP_001097275.1\| PREDICTED: similar to ATPase, H+ transporting, lysosomal 21kDa, V0 ...	182.0	[0..1]	[205..1]

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Predicted Domain #1

Region A:
Residues: [1-205]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTGLELLYLG IFVAFWACMV VVGICYTIFD LGFRFDVAWF LTETSPFMWS NLGIGLAISL  60
   61 SVVGAAWGIY ITGSSIIGGG VKAPRIKTKN LVSIIFCEAV AIYGIIMAIV ISNMAEPFSA 120
  121 TEPKAIGHRN YHAGYSMFGA GLTVGLSNLF CGVCVGIVGS GAALADAQNP SLFVKILIVE 180
  181 IFGSAIGLFG VIVAILQTSR VKMGD

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	22.221849
Match:	2bl2A
Description:	The membrane rotor of the V-type ATPase from Enterococcus hirae
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits