YRC Public Data Repository - Protein Structure Prediction

Protein:	PROB_SCHPO
Organism:	Schizosaccharomyces pombe 972h-
Length:	402 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PROB_SCHPO.

Description	E-value	Query Range	Subject Range
PROB_SYNP6 - Glutamate 5-kinase OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=proB PE=3 SV...	319.0	[0..1]	[386..1]
PROB_NOSS1 - Glutamate 5-kinase OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=proB PE=3 SV=2	319.0	[0..1]	[386..1]
PROB_SYNE7 - Glutamate 5-kinase OS=Synechococcus elongatus (strain PCC 7942) GN=proB PE=3 SV=1	319.0	[0..13]	[386..4]
PROB_THETN - Glutamate 5-kinase OS=Thermoanaerobacter tengcongensis GN=proB PE=3 SV=1 gi\|254479125, gi... - gi\|254479125\|ref\|ZP_05092476.1\| glutamate 5-kinase [Carboxydibrachium pacificum DSM 12653], gi\|22348... PROB_CALS4 - Glutamate 5-kinase OS=Caldanaerobacter subterraneus subsp. tengcongensis (strain DSM 15242 / JCM 110...	316.0	[0..13]	[395..2]
gi\|67922969, gi\|... - gi\|67922969\|ref\|ZP_00516464.1\| Glutamate 5-kinase, ProB-related [Crocosphaera watsonii WH 8501], gi\|...	314.0	[0..8]	[386..1]
PROB_ANAVT - Glutamate 5-kinase OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=proB PE=3 SV=1	314.0	[0..12]	[386..3]
PROB_GEOMG - Glutamate 5-kinase OS=Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210) GN=proB PE=3 ...	313.0	[0..3]	[387..1]
PROB_DECAR - Glutamate 5-kinase OS=Dechloromonas aromatica (strain RCB) GN=proB PE=3 SV=1	311.0	[0..1]	[386..1]
gi\|241902816, gi... - gi\|241902816\|ref\|ZP_04787547.1\| glutamate 5-kinase [Thermoanaerobacter brockii subsp. finnii Ako-1],... gi\|242257172, gi... - gi\|242257172\|ref\|ZP_04802045.1\| glutamate 5-kinase [Thermoanaerobacter sp. X513], gi\|242231277\|gb\|EE... PROB_THEPX - Glutamate 5-kinase OS=Thermoanaerobacter sp. (strain X514) GN=proB PE=3 SV=1 PROB_THEP3 - Glutamate 5-kinase OS=Thermoanaerobacter pseudethanolicus (strain ATCC 33223 / 39E) GN=proB PE=3 SV=...	308.0	[0..13]	[395..2]
gi\|88938231, gi\|... - gi\|88938231\|ref\|ZP_01143716.1\| Glutamate 5-kinase, ProB-related [Geobacter uraniumreducens Rf4], gi\|...	307.0	[0..2]	[387..17]

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Predicted Domain #1

Region A:
Residues: [1-402]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSPKSKSTNK TYTIVIKLGT SSICDEKTHE PLISNLSLIV ETVVKLRKLG HNVVLVSSGG  60
   61 IAMGLRRLDL PKRPSKLSAV QAIAAVGQGR LISLWDTLFT QLRQPIAQVL ITRNDIAERS 120
  121 QYVNAANTIS ELLHFGVVPI VNENDTLSVQ EIRFGDNDTL SAITAGMINA DYLFLLTDVD 180
  181 CLYTDNPRTN PDAKPILKIH DTSMVNANVS TPGSGVGTGG MKTKLIAADL GTSSGVNVII 240
  241 CRGSKPSSIF DIIRQESSDN KNESVELPLH THFVAKKQGR IRDRHFWLLH GLKSHGSLEI 300
  301 DRGAFEAITR TNRAGLLPVG VTKVHGHFSA HQAVTVIYNG EEIGRALVNY SSTEIDLIKG 360
  361 KRSKEIASIL GYNETEYVAY RDYLVVHGLN SHHDSQVSSD EH

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	81.30103
Match:	2j5tA
Description:	No description for 2j5tA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits