| Protein: | gi|168278937, gi... |
| Organism: | synthetic construct |
| Length: | 421 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|168278937, gi....
| Description | E-value | Query Range |
Subject Range |
|
|
8.0E-91 | [1..421] | [1..420] |
|
|
8.0E-90 | [1..421] | [85..505] |
|
|
1.0E-89 | [1..421] | [4..424] |
|
|
1.0E-88 | [1..421] | [1..420] |
|
|
1.0E-88 | [1..421] | [121..541] |
|
|
3.0E-87 | [1..421] | [1..421] |
|
Region A: Residues: [1-179] |
1 11 21 31 41 51
| | | | | |
1 MADISLDELI RKRGAAAKGR LNARPGVGGV RSRVGIQQGL LSQSTRTATF QQRFDARQKI 60
61 GLSDARLKLG VKDAREKLLQ KDARFRIKGK VQDAREMLNS RKQQTTVPQK PRQVADAREK 120
121 ISLKRSSPAA FINPPIGTVT PALKLTKTIQ VPQQKAMAPL HPHPAGMRIN VVNNHQAKQ
|
| Detection Method: |  |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [180-340] |
1 11 21 31 41 51
| | | | | |
1 NLYDLDEDDD GIASVPTKQM KFAASGGFLH HMAGLSSSKL SMSKALPLTK VVQNDAYTAP 60
61 ALPSSIRTKA LTNMSRTLVN KEEPPKELPA AEPVLSPLEG TKMTVNNLHP RVTEEDIVEL 120
121 FCVCGALKRA RLVHPGVAEV VFVKKDDAIT AYKKYNNRCL D
|
| Detection Method: | |
| Confidence: | 36.045757 |
| Match: | 1up1A |
| Description: | UP1, THE TWO RNA-RECOGNITION MOTIF DOMAIN OF HNRNP A1 |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 0.950788308762215 | bayes_pls_golite062009 |
| nucleic acid binding | 0.29562225149076 | bayes_pls_golite062009 |
|
Region A: Residues: [341-421] |
1 11 21 31 41 51
| | | | | |
1 GQPMKCNLHM NGNVITSDQP ILLRLSDSPS MKKESELPRR VNSASSSNPP AEVDPDTILK 60
61 ALFKSSGASV TTQPTEFKIK L
|
| Detection Method: | |
| Confidence: | 21.0 |
| Match: | 2adcA |
| Description: | Solution structure of Polypyrimidine Tract Binding protein RBD34 complexed with CUCUCU RNA |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 0.950788308762215 | bayes_pls_golite062009 |
| nucleic acid binding | 0.29562225149076 | bayes_pls_golite062009 |
