YRC Public Data Repository - Protein Structure Prediction

Protein:	PDI1_SCHPO
Organism:	Schizosaccharomyces pombe 972h-
Length:	492 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PDI1_SCHPO.

Description	E-value	Query Range	Subject Range
gi\|159129153 - gi\|159129153\|gb\|EDP54267.1\| protein disulfide isomerase Pdi1, putative [Aspergillus fumigatus A1163] gi\|70989789, gi\|... - gi\|70989789\|ref\|XP_749744.1\| protein disulfide isomerase Pdi1 [Aspergillus fumigatus Af293], gi\|6684...	317.0	[0..3]	[483..9]
PDI_ASPNG - Protein disulfide-isomerase OS=Aspergillus niger GN=pdiA PE=2 SV=1	307.0	[0..5]	[486..8]
gi\|114670980 - gi\|114670980\|ref\|XP_001164327.1\| PREDICTED: prolyl 4-hydroxylase, beta subunit isoform 5 [Pan troglo...	306.0	[0..17]	[459..19]
PDI_ASPOR - Protein disulfide-isomerase OS=Aspergillus oryzae GN=pdiA PE=3 SV=1 PDI_ASPOR - Protein disulfide-isomerase OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) GN=pdiA PE=3 SV=1	302.0	[0..21]	[483..28]
gi\|46108728, gi\|... - gi\|46108728\|ref\|XP_381422.1\| hypothetical protein FG01246.1 [Gibberella zeae PH-1], gi\|42545264\|gb\|E...	301.0	[0..21]	[492..600]
gi\|40787691 - gi\|40787691\|gb\|AAH64877.1\| P4hb protein [Xenopus tropicalis]	300.0	[0..1]	[492..5]
PDIA1_RABIT - Protein disulfide-isomerase OS=Oryctolagus cuniculus GN=P4HB PE=2 SV=1	299.0	[0..1]	[492..1]
PDIA1_PONAB - Protein disulfide-isomerase OS=Pongo abelii GN=P4HB PE=2 SV=1 PDIA1_PONPY - Protein disulfide-isomerase precursor - Pongo pygmaeus (Orangutan)	299.0	[0..2]	[492..4]

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Predicted Domain #1

Region A:
Residues: [1-492]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKISNLLAAF LAFSGGFFCA SAEVPKVNKE GLNELITADK VLMVKFYAPW CGHCKALAPE  60
   61 YESAADELEK DGISLVEVDC TEEGDLCSEY SIRGYPTLNV FKNGKQISQY SGPRKHDALV 120
  121 KYMRKQLLPT VKPISKDTLE NFVEKADDLA VVAFFKDQKL NDTYTEVAEV MKDDFVFAAS 180
  181 DDKELAKSLG SNFPGIVAFT KDAAQDSDKL VYTGDWDPAS IADFIGVSSI PLLDELNQMT 240
  241 FGKYQQSGLP LGIIFYNSTE SRDELYDVFQ PLAKKYQDTL RFAFLDAVRY GAVAKQMNVE 300
  301 SDWPAFVIAN LKSMLKYPFP TTELTAKAMT KFVGDFVDGK LQPKIKSQPI PESQEDLVVL 360
  361 VADNFDDIVM DETKDVLVEF YAPWCGHCKN LAPTYEKLAE EYSDDSNVVV AKIDATENDI 420
  421 SVSISGFPTI MFFKANDKVN PVRYEGDRTL EDLSAFIDKH ASFEPIKKEK ESVPAPDLED 480
  481 QVAVEDEMAD EL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	64.0
Match:	2b5eA
Description:	Crystal Structure of Yeast Protein Disulfide Isomerase
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits