YRC Public Data Repository - Protein Structure Prediction

Protein:	COQ7_MOUSE
Organism:	Mus musculus
Length:	217 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for COQ7_MOUSE.

Description	E-value	Query Range	Subject Range
gi\|109127736 - gi\|109127736\|ref\|XP_001083388.1\| PREDICTED: similar to COQ7 protein [Macaca mulatta]	326.0	[0..1]	[217..1]
gi\|117645862, gi... - gi\|117645862\|emb\|CAL38398.1\| hypothetical protein [synthetic construct], gi\|117644926\|emb\|CAL37929.1... gi\|25453484, gi\|... - gi\|25453484\|ref\|NP_057222.2\| COQ7 protein [Homo sapiens], gi\|13112023\|gb\|AAH03185.1\| Coenzyme Q7 hom... HGNC:2244\|MIM:60... - Q7 homolog, ubiquinone (yeast)	325.0	[0..1]	[217..1]
gi\|114661284, gi... - gi\|114661288\|ref\|XP_001153055.1\| PREDICTED: COQ7 protein isoform 6 [Pan troglodytes], gi\|114661286\|r...	324.0	[0..1]	[217..1]
COQ7_BOVIN - 5-demethoxyubiquinone hydroxylase, mitochondrial OS=Bos taurus GN=COQ7 PE=2 SV=1	313.0	[0..1]	[217..1]
gi\|73958985 - gi\|73958985\|ref\|XP_536955.2\| PREDICTED: similar to Ubiquinone biosynthesis protein COQ7 homolog (Coe...	308.0	[0..1]	[217..1]

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Predicted Domain #1

Region A:
Residues: [1-217]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSAAGAIAAA SVGRLRTGVR RPFSEYGRGL IIRCHSSGMT LDNINRAAVD RIIRVDHAGE  60
   61 YGANRIYAGQ MAVLGRTSVG PVIQKMWDQE KNHLKKFNEL MIAFRVRPTV LMPLWNVAGF 120
  121 ALGAGTALLG KEGAMACTVA VEESIANHYN NQIRMLMEED PEKYEELLQV IKQFRDEELE 180
  181 HHDTGLDHDA ELAPAYALLK RIIQAGCSAA IYLSERF

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	3.83
Match:	2fzfA
Description:	Hypothetical Protein Pfu-1136390-001 From Pyrococcus furiosus
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
oxidoreductase activity	2.54239919926847	bayes_pls_golite062009
binding	2.15097517783454	bayes_pls_golite062009
nucleic acid binding	0.289249271377329	bayes_pls_golite062009
protein binding	0.222916509072005	bayes_pls_golite062009
catalytic activity	0.219299244701657	bayes_pls_golite062009
DNA binding	0.160477208079303	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: