YRC Public Data Repository - Protein Structure Prediction

Protein:	ATP5J_MOUSE
Organism:	Mus musculus
Length:	108 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ATP5J_MOUSE.

Description	E-value	Query Range	Subject Range
gi\|114683721 - gi\|114683721\|ref\|XP_001158570.1\| PREDICTED: ATP synthase, H+ transporting, mitochondrial F0 complex,...	201.0	[0..1]	[108..9]
gi\|51479141 - gi\|51479141\|ref\|NP_001003701.1\| ATP synthase, H+ transporting, mitochondrial F0 complex, subunit F6 ...	200.0	[0..1]	[108..9]
ATP5J_BOVIN - ATP synthase-coupling factor 6, mitochondrial OS=Bos taurus GN=ATP5J PE=1 SV=2	197.0	[0..1]	[108..1]
gi\|57108752 - gi\|57108752\|ref\|XP_535569.1\| PREDICTED: similar to ATP synthase coupling factor 6, mitochondrial pre...	197.0	[0..1]	[108..1]
ATP5J_RAT - ATP synthase-coupling factor 6, mitochondrial OS=Rattus norvegicus GN=Atp5j PE=1 SV=1	195.0	[0..1]	[108..1]
gi\|61372423, gi\|... - gi\|61372423\|gb\|AAX43841.1\| ATP synthase H+ transporting mitochondrial F0 complex subunit F6 [synthet...	194.0	[0..1]	[108..1]
ATP5J_MACFA - ATP synthase-coupling factor 6, mitochondrial OS=Macaca fascicularis GN=ATP5J PE=3 SV=1 gi\|109065657, gi... - gi\|109065665\|ref\|XP_001105349.1\| PREDICTED: ATP synthase, H+ transporting, mitochondrial F0 complex,...	193.0	[0..1]	[108..1]

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Predicted Domain #1

Region A:
Residues: [1-108]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVLQRIFRLS SVLRSAVSVH LKRNIGVTAV AFNKELDPVQ KLFVDKIREY KSKRQASGGP  60
   61 VDIGPEYQQD LDRELYKLKQ MYGKGEMDTF PTFKFDDPKF EVIDKPQS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	34.221849
Match:	2clyC
Description:	No description for 2clyC was found.

Predicted functions:

Term	Confidence	Notes
hydrogen ion transmembrane transporter activity	8.72510057985857	bayes_pls_golite062009
monovalent inorganic cation transmembrane transporter activity	8.55000579659438	bayes_pls_golite062009
inorganic cation transmembrane transporter activity	7.93389909959118	bayes_pls_golite062009
cation transmembrane transporter activity	3.61283616144649	bayes_pls_golite062009
ion transmembrane transporter activity	3.50519293233107	bayes_pls_golite062009
substrate-specific transmembrane transporter activity	3.29516277085298	bayes_pls_golite062009
substrate-specific transporter activity	3.15545142940522	bayes_pls_golite062009
hydrogen-exporting ATPase activity, phosphorylative mechanism	1.0240589636709	bayes_pls_golite062009
ATPase activity, coupled to transmembrane movement of ions	0.84815467800665	bayes_pls_golite062009
catalytic activity	0.67288476528593	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: