YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|44986385
Organism:	Ashbya gossypii ATCC 10895
Length:	79 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|44986385.

Description	E-value	Query Range	Subject Range
DAD4_ASHGO - DASH complex subunit DAD4 OS=Ashbya gossypii GN=DAD4 PE=3 SV=2 DAD4_ASHGO - DASH complex subunit DAD4 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-10...	104.0	[0..8]	[79..1]
DAD4_YEAST - DASH complex subunit DAD4 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=DAD4 PE=1 SV=1 Sbay_484.6, Sbay... - probable YDR320C-A HSK2 (6422-6640), null DAD4 - Essential subunit of the Dam1 complex (aka DASH complex), couples kinetochores to the force produced... gi\|190404739 - gi\|190404739\|gb\|EDV08006.1\| DASH complex subunit DAD4 [Saccharomyces cerevisiae RM11-1a] ORFP:4920 - YDR320C-A, Contig c106 7411-7629 reverse complement gi\|151942296 - gi\|151942296\|gb\|EDN60652.1\| duo1 and dam1 interacting protein [Saccharomyces cerevisiae YJM789]	100.0	[0..8]	[79..1]
DAD4_KLULA - DASH complex subunit DAD4 OS=Kluyveromyces lactis GN=DAD4 PE=3 SV=1 DAD4_KLULA - DASH complex subunit DAD4 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 12...	98.0	[0..8]	[79..1]
DAD4_CANGA - DASH complex subunit DAD4 OS=Candida glabrata GN=DAD4 PE=3 SV=1 DAD4_CANGA - DASH complex subunit DAD4 OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / N...	97.0	[0..8]	[79..2]
gi\|46124023, gi\|... - gi\|46124023\|ref\|XP_386565.1\| hypothetical protein FG06389.1 [Gibberella zeae PH-1], gi\|42551750\|gb\|E...	96.0	[0..8]	[78..1]
DAD4_YARLI - DASH complex subunit DAD4 OS=Yarrowia lipolytica GN=DAD4 PE=3 SV=1 DAD4_YARLI - DASH complex subunit DAD4 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=DAD4 PE=3 SV=1	95.0	[0..8]	[78..1]
DAD4_SCHPO - DASH complex subunit dad4 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=dad4 PE=1 SV=2 dad4 - DASH complex subunit Dad4	95.0	[0..8]	[79..1]
gi\|71003708, gi\|... - gi\|71003708\|ref\|XP_756520.1\| hypothetical protein UM00373.1 [Ustilago maydis 521], ref\|XP_397988.1\| ...	73.0	[0..8]	[69..1]
gi\|111069191 - gi\|111069191\|gb\|EAT90311.1\| hypothetical protein SNOG_02099 [Phaeosphaeria nodorum SN15]	70.0	[0..28]	[78..10]

Back

Predicted Domain #1

Region A:
Residues: [1-79]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MADGPQEMEN PHEKVQVGIL ARIVGNVERL NQSVATLNQE LERINTRNRN LELMGQMCEH  60
   61 YGRATAFNLK TTGNRQGPV

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	46.920819
Match:	PF08650.1
Description:	No description for PF08650.1 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits