YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|109072254
Organism:	Macaca mulatta
Length:	71 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|109072254.

Description	E-value	Query Range	Subject Range
gi\|218199880 - gi\|218199880\|gb\|EEC82307.1\| hypothetical protein OsI_26568 [Oryza sativa Indica Group] gi\|50938545, gi\|... - gi\|50938545\|ref\|XP_478800.1\| unknown protein [Oryza sativa (japonica cultivar-group)], gi\|34393555\|d...	2.0E-23	[1..67]	[62..128]
gi\|8778626, gi\|2... - gi\|8778626\|gb\|AAF79634.1\|AC025416_8 F5O11.12 [Arabidopsis thaliana], pir\|\|E86258 protein F5O11.12 [i...	5.0E-23	[1..67]	[43..109]
TF2H5_MOUSE - General transcription factor IIH subunit 5 OS=Mus musculus GN=Gtf2h5 PE=1 SV=1	2.0E-21	[1..71]	[1..71]
TF2H5_CHICK - General transcription factor IIH subunit 5 OS=Gallus gallus GN=GTF2H5 PE=3 SV=1	7.0E-21	[1..71]	[1..71]
TFB5_ASHGO - RNA polymerase II transcription factor B subunit 5 OS=Ashbya gossypii GN=TFB5 PE=3 SV=1 TFB5_ASHGO - RNA polymerase II transcription factor B subunit 5 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.5...	2.0E-20	[1..71]	[1..68]
gi\|62859795 - gi\|62859795\|ref\|NP_001017298.1\| general transcription factor IIH, polypeptide 5 [Xenopus (Silurana) ...	3.0E-20	[1..71]	[1..71]
gi\|225716198 - gi\|225716198\|gb\|ACO13945.1\| General transcription factor IIH subunit 5 [Esox lucius] gi\|125846362, gi... - gi\|56208041\|emb\|CAI20614.1\| novel protein similar to vertebrate TFIIH basal transcription factor com...	8.0E-20	[1..71]	[1..71]

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Predicted Domain #1

Region A:
Residues: [1-71]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVNVLKGVLI ECDPAMKQFL LYLDESNALG KKFIIQDIDD THVFVIAELV NVLQERVGEL  60
   61 MDQNAFSLTQ K

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	23.69897
Match:	2jnjA
Description:	No description for 2jnjA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits