YRC Public Data Repository - Protein Structure Prediction

Protein:	CD69_MOUSE
Organism:	Mus musculus
Length:	199 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CD69_MOUSE.

Description	E-value	Query Range	Subject Range
gi\|148744280, gi... - gi\|27806705\|ref\|NP_776439.1\| CD69 antigen (p60, early T-cell activation antigen) [Bos taurus], gi\|14...	159.0	[0..1]	[199..1]
gi\|61097910, gi\|... - gi\|61097910\|ref\|NP_599154.1\| Cd69 molecule [Rattus norvegicus], gi\|56789283\|gb\|AAH88219.1\| Cd69 mole...	159.0	[0..1]	[196..1]
gi\|19550842, gi\|... - gi\|47522992\|ref\|NP_999256.1\| CD69 antigen (p60, early T-cell activation antigen) [Sus scrofa], gi\|19...	152.0	[0..1]	[198..1]
CLC4M_PANTR - C-type lectin domain family 4 member M OS=Pan troglodytes GN=CLEC4M PE=2 SV=1	147.0	[0..62]	[198..291]
CD69 - CD69 molecule gi\|123999929, gi... - gi\|123999929\|gb\|ABM87473.1\| CD69 molecule [synthetic construct], gi\|123992999\|gb\|ABM84101.1\| CD69 mo...	145.0	[0..1]	[199..1]
CD209_HYLLA - CD209 antigen OS=Hylobates lar GN=CD209 PE=3 SV=1	145.0	[0..61]	[198..278]
CLC4M_SYMSY - C-type lectin domain family 4 member M OS=Symphalangus syndactylus GN=CLEC4M PE=3 SV=1	144.0	[0..62]	[197..268]

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Predicted Domain #1

Region A:
Residues: [1-199]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDSENCSITE NSSSHLERGQ KDHGTSIHFE KHHEGSIQVS IPWAVLIVVL ITSLIIALIA  60
   61 LNVGKYNCPG LYEKLESSDH HVATCKNEWI SYKRTCYFFS TTTKSWALAQ RSCSEDAATL 120
  121 AVIDSEKDMT FLKRYSGELE HWIGLKNEAN QTWKWANGKE FNSWFNLTGS GRCVSVNHKN 180
  181 VTAVDCEANF HWVCSKPSR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	35.09691
Match:	1fm5A
Description:	CD69
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits