YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|109079065
Organism:	Macaca mulatta
Length:	349 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|109079065.

Description	E-value	Query Range	Subject Range
TAF7_CRIGR - Transcription initiation factor TFIID subunit 7 OS=Cricetulus griseus GN=TAF7 PE=1 SV=1	0.0	[1..349]	[1..341]
gi\|57043483 - gi\|57043483\|ref\|XP_544308.1\| PREDICTED: similar to TATA box-binding protein-associated factor 2F [Ca...	0.0	[1..333]	[1..333]
gi\|50745656 - gi\|50745656\|ref\|XP_420187.1\| PREDICTED: similar to transcription factor IID [Gallus gallus]	0.0	[1..349]	[1..353]
gi\|2136248, gi\|6... - gi\|642795\|gb\|AAB60347.1\| TFIID subunit TAFII55, gi\|2136248\|pir\|\|I38904 TATA-binding protein (TBP)-as...	0.0	[1..333]	[1..333]
TAF7_BOVIN - Transcription initiation factor TFIID subunit 7 OS=Bos taurus GN=TAF7 PE=2 SV=1	0.0	[1..333]	[1..333]
gi\|149017311, gi... - gi\|34878802\|ref\|XP_226031.2\| PREDICTED: similar to Transcription initiation factor TFIID subunit 7 (...	0.0	[1..333]	[1..325]
TAF7_MOUSE - Transcription initiation factor TFIID subunit 7 OS=Mus musculus GN=Taf7 PE=1 SV=1	0.0	[1..333]	[1..325]
gi\|27545271, gi\|... - gi\|47940344\|gb\|AAH71324.1\| TAF7 RNA polymerase II, TATA box binding protein (TBP)-associated factor ...	3.0E-93	[2..349]	[12..362]
gi\|47225335 - gi\|47225335\|emb\|CAG09835.1\| unnamed protein product [Tetraodon nigroviridis]	5.0E-90	[2..349]	[12..362]

Back

Predicted Domain #1

Region A:
Residues: [1-349]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKSKDDAPH ELESQFILRL PPEYASTVRR AVQSGHVNLK DRLTIELHPD GRHGIVRVDR  60
   61 VPLASKLVDL PCVMESLKTI DKKTFYKTAD ICQMLVSTVD GDLYPPVEEP VASTDPKASK 120
  121 KKDKDKEKKF IWNHGITLPL KNVRKRRFRK TAKKKYIESP DVEKEVKRLL STDAEAVSTR 180
  181 WEIIAEDETK EAENQGLDIS SPGMSGHRQG HDSLEHDELR EIFNDLSSSS EDEDETQHQD 240
  241 EEDINIIDTE EDLERQLQDK LNESDEQHQE NEGTNQLVMG IQKQIDNMKG KLQETQDRAK 300
  301 RQEDLIMKVE NLALKNRFQA VLDELKQKED REKEQLSSLQ EELESLLEK

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.27
Match:	1jchA
Description:	Ribonuclease domain of colicin E3; Colicin E3 translocation domain; Colicin E3 receptor domain
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	2.58108937165812	bayes_pls_golite062009
protein binding	2.33863707177656	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: