YRC Public Data Repository - Protein Structure Prediction

Protein:	RM31_SCHPO
Organism:	Schizosaccharomyces pombe 972h-
Length:	115 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RM31_SCHPO.

Description	E-value	Query Range	Subject Range
gi\|46122223, gi\|... - gi\|46122223\|ref\|XP_385665.1\| hypothetical protein FG05489.1 [Gibberella zeae PH-1], gi\|42550979\|gb\|E...	185.0	[0..1]	[115..1]
gi\|46097847, gi\|... - gi\|71008572\|ref\|XP_758229.1\| hypothetical protein UM02082.1 [Ustilago maydis 521], ref\|XP_399697.1\| ...	176.0	[0..1]	[115..151]
gi\|88183951, gi\|... - gi\|88183951\|gb\|EAQ91419.1\| hypothetical protein CHGG_03354 [Chaetomium globosum CBS 148.51], gi\|1162...	175.0	[0..1]	[115..1]
gi\|169612872, gi... - gi\|169612872\|ref\|XP_001799853.1\| hypothetical protein SNOG_09564 [Phaeosphaeria nodorum SN15], gi\|11...	172.0	[0..1]	[115..1]
gi\|40739570, gi\|... - gi\|67540412\|ref\|XP_663980.1\| hypothetical protein AN6376.2 [Aspergillus nidulans FGSC A4], ref\|XP_41...	165.0	[0..5]	[115..2]
gi\|39976785, gi\|... - gi\|39976785\|ref\|XP_369780.1\| hypothetical protein MGG_06295 [Magnaporthe grisea 70-15], gb\|EAA56324....	163.0	[0..1]	[115..1]
gi\|119190635, gi... - gi\|90304710\|gb\|EAS34341.1\| conserved hypothetical protein [Coccidioides immitis RS], gi\|119190635\|re...	161.0	[0..5]	[115..2]
gi\|169774385 - gi\|169774385\|ref\|XP_001821660.1\| hypothetical protein [Aspergillus oryzae RIB40] gi\|238497089, gi... - gi\|238497089\|ref\|XP_002379780.1\| 54S ribosomal protein L31, mitochondrial precursor, putative [Asper... gi\|83769523 - gi\|83769523\|dbj\|BAE59658.1\| unnamed protein product [Aspergillus oryzae]	158.0	[0..5]	[115..2]
gi\|114196440, gi... - gi\|115384402\|ref\|XP_001208748.1\| hypothetical protein ATEG_01383 [Aspergillus terreus NIH2624], gi\|1...	157.0	[0..5]	[115..2]
gi\|85080741 - gi\|85080741\|ref\|XP_956596.1\| hypothetical protein [Neurospora crassa OR74A] gi\|32403368, gi\|... - gi\|32403368\|ref\|XP_322297.1\| hypothetical protein [Neurospora crassa], gi\|28917666\|gb\|EAA27360.1\| hy...	150.0	[0..18]	[115..232]

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Predicted Domain #1

Region A:
Residues: [1-115]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLGAFNSTLA RFGGLVHKVP WRLSQRRKYR HRQRLRAVDE VVDVLRTALQ EKNQSCKRIE  60
   61 SFVANHQPES QMSPKDKYTM FTRKTQGAGL QGFRKGVHKS PKWTRSTNRV NPTGF

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits