YRC Public Data Repository - Protein Structure Prediction

Protein:	EBP2_SCHPO
Organism:	Schizosaccharomyces pombe 972h-
Length:	333 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for EBP2_SCHPO.

Description	E-value	Query Range	Subject Range
gi\|7496247 - gi\|7496247\|pir\|\|T15543 hypothetical protein C18A3.3 - Caenorhabditis elegans	263.0	[0..9]	[309..125]
gi\|109003343 - gi\|109003343\|ref\|XP_001092293.1\| PREDICTED: EBNA1 binding protein 2 isoform 2 [Macaca mulatta]	263.0	[0..67]	[329..20]
EBP2_MOUSE - Probable rRNA-processing protein EBP2 OS=Mus musculus GN=Ebna1bp2 PE=2 SV=1	254.0	[0..52]	[330..1]
gi\|30584511, gi\|... - gi\|60653835\|gb\|AAX29610.1\| EBNA1 binding protein 2 [synthetic construct], gi\|30584511\|gb\|AAP36508.1\|...	250.0	[0..67]	[330..20]
gi\|61362040, gi\|... - gi\|61362040\|gb\|AAX42147.1\| EBNA1 binding protein 2 [synthetic construct], gi\|61362036\|gb\|AAX42146.1\|... EBNA1BP2 - EBNA1 binding protein 2	249.0	[0..67]	[330..20]
gi\|145013943, gi... - gi\|39968721\|ref\|XP_365751.1\| hypothetical protein MGG_02453 [Magnaporthe grisea 70-15], gb\|EAA54468....	247.0	[0..6]	[331..105]
gi\|56556187, gi\|... - gi\|56790289\|ref\|NP_001008721.1\| EBNA1 binding protein 2 [Rattus norvegicus], gi\|56556187\|gb\|AAH87738...	247.0	[0..52]	[330..1]
gi\|77735789, gi\|... - gi\|77735789\|ref\|NP_001029589.1\| EBNA1 binding protein 2 [Bos taurus], gi\|74354064\|gb\|AAI02357.1\| EBN...	245.0	[0..67]	[330..20]

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Predicted Domain #1

Region A:
Residues: [1-94]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGIESKQRR AQKKAAKAAM KEKKNKESNE SSTSVEALNE KEMINTIKSP IIETADTADQ  60
   61 ENESEGSDEV ELSDLEGIEL EEDADLIRKR KLAI

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [95-333]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NNTVALENIY ERIKYPDDIS FVENQAVTTK EPIIIENVED DLARELAFYK QGVSSVKAAF  60
   61 AKLREANVLI SRPHDYFAEM LKSDDHMEKV RQELIKEATA KKLSQQAKKQ RELKKFGKQV 120
  121 QLAKQEERQR EKKETLEKIN LLKRKHTGGD LTTEDDFDIA LSSASADTFK KGSRSTKSRP 180
  181 QPNPKRQKKN EKYGFGGPKH RSKSNDLDSL AATEFGRKGL KNIKSKKRPG KARREKARK

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits