YRC Public Data Repository - Protein Structure Prediction

Protein:	RS9B_SCHPO
Organism:	Schizosaccharomyces pombe 972h-
Length:	192 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RS9B_SCHPO.

Description	E-value	Query Range	Subject Range
gi\|125977174, gi... - gi\|54641368\|gb\|EAL30118.1\| GA17431-PA [Drosophila pseudoobscura], gi\|125977174\|ref\|XP_001352620.1\| G...	214.0	[0..3]	[189..5]
gi\|112984022, gi... - gi\|54609299\|gb\|AAV34865.1\| ribosomal protein S9 [Bombyx mori], gi\|112984022\|ref\|NP_001037265.1\| ribo...	205.0	[0..2]	[192..4]
gi\|49532932 - gi\|49532932\|dbj\|BAD26701.1\| ribosomal protein S9 [Plutella xylostella]	204.0	[0..2]	[192..4]
gi\|56809869 - gi\|56809869\|gb\|AAW31599.1\| ribosomal protein S9 [Aedes albopictus]	200.0	[0..3]	[192..5]
gi\|157123910, gi... - gi\|94468470\|gb\|ABF18084.1\| ribosomal protein S4 [Aedes aegypti], gi\|157123910\|ref\|XP_001653969.1\| 40...	200.0	[0..3]	[192..5]
gi\|48101950 - gi\|48101950\|ref\|XP_392726.1\| PREDICTED: similar to Ribosomal protein S9 CG3395-PA, isoform A [Apis m...	199.0	[0..3]	[192..5]
gi\|38047837 - gi\|38047837\|gb\|AAR09821.1\| similar to Drosophila melanogaster RpS9 [Drosophila yakuba]	198.0	[0..3]	[189..5]
gi\|46486574 - gi\|46486574\|gb\|AAS98723.1\| ribosomal protein subunit 4 [Hypnodendron diversifolium]	197.0	[0..12]	[180..1]

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Predicted Domain #1

Region A:
Residues: [1-192]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPSAPRKQSK TYKVPRRPFE SARLDAELKL AGEYGLRNKH EIWRVALTLS KIRRAARELL  60
   61 TLDEKDPKRL FEGNAIIRRL VRLGILDESR MKLDYVLALR IEDFLERRLQ TQVFKLGLAK 120
  121 SIHHARVLIF QRHIRVGKQI VNVPSFVVRL DAQKHIDFAL SSPYGGGRPG RCKRKRLRSQ 180
  181 QEGGEGEEAE EE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	40.30103
Match:	1s1hD
Description:	Structure of the ribosomal 80S-eEF2-sordarin complex from yeast obtained by docking atomic models for RNA and protein components into a 11.7 A cryo-EM map. This file, 1S1H, Contains 40S subunit. The 60S Ribosomal Subunit Is In File 1S1I.
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits