YRC Public Data Repository - Protein Structure Prediction

Protein:	RS7_SCHPO
Organism:	Schizosaccharomyces pombe 972h-
Length:	195 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RS7_SCHPO.

Description	E-value	Query Range	Subject Range
gi\|76666230 - gi\|76666230\|ref\|XP_581800.2\| PREDICTED: similar to 40S ribosomal protein S7 (S8) [Bos taurus]	360.0	[0..2]	[188..179]
gi\|50744918 - gi\|50744918\|ref\|XP_419936.1\| PREDICTED: similar to ribosomal protein S7 [Gallus gallus]	356.0	[0..2]	[188..97]
gi\|60652833 - gi\|60652833\|gb\|AAX29111.1\| ribosomal protein S7 [synthetic construct]	339.0	[0..2]	[188..3]
gi\|55594424 - gi\|55594424\|ref\|XP_515279.1\| PREDICTED: similar to 40S ribosomal protein S7 (S8) [Pan troglodytes] RPS7 - ribosomal protein S7 RS7_BOVIN - 40S ribosomal protein S7 OS=Bos taurus GN=RPS7 PE=2 SV=1 RS7_RAT - 40S ribosomal protein S7 OS=Rattus norvegicus GN=Rps7 PE=1 SV=1 gi\|126303250 - gi\|126303250\|ref\|XP_001372205.1\| PREDICTED: similar to ribosomal protein S7 [Monodelphis domestica] ENSOCUP000000073... - pep:novel scaffold:oryCun2:GL018721:247664:252773:1 gene:ENSOCUG00000008507 transcript:ENSOCUT000000... RS7_FELCA - 40S ribosomal protein S7 OS=Felis catus GN=RPS7 PE=2 SV=1 ENSCJAT000000435... - null, null, null RS7_MOUSE - 40S ribosomal protein S7 OS=Mus musculus GN=Rps7 PE=2 SV=1 gi\|57098089 - gi\|57098089\|ref\|XP_532859.1\| PREDICTED: similar to 40S ribosomal protein S7 (S8) isoform 1 [Canis fa... gi\|60655919, gi\|... - gi\|60655919\|gb\|AAX32523.1\| ribosomal protein S7 [synthetic construct], gi\|208967334\|dbj\|BAG73681.1\| ... ENSMMUT000000166... - null, null gi\|149727784 - gi\|149727784\|ref\|XP_001503681.1\| PREDICTED: similar to ribosomal protein S7 [Equus caballus] gi\|297172 - gi\|297172\|emb\|CAA37457.1\| ribosomal protein S7 [Rattus rattus]	339.0	[0..2]	[188..3]
gi\|148699419, gi... - gi\|94409504\|ref\|XP_987138.1\| PREDICTED: similar to 40S ribosomal protein S7 (S8) [Mus musculus], gi\|...	338.0	[0..2]	[188..3]
gi\|55639547 - gi\|55639547\|ref\|XP_509573.1\| PREDICTED: similar to ribosomal protein S7 [Pan troglodytes]	335.0	[0..2]	[188..3]
RS7_XENLA - 40S ribosomal protein S7 OS=Xenopus laevis GN=rps7 PE=2 SV=2	333.0	[0..2]	[188..3]
RS7_ICTPU - 40S ribosomal protein S7 OS=Ictalurus punctatus GN=rps7 PE=2 SV=1	332.0	[0..2]	[188..3]
RS7_TAKRU - 40S ribosomal protein S7 OS=Takifugu rubripes GN=rps7 PE=3 SV=1	331.0	[0..2]	[188..3]

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Predicted Domain #1

Region A:
Residues: [1-195]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSALNKIVKR SSSQPTETDL LVAQCLYDLE SSSKDMAKEL RPLQITSARE VEVGGGKKAI  60
   61 VVFVPQPLLK AFHKCQARLT RELEKKFADR HVIFIAQRRI LPKPGRKSRV TQKRPRSRTL 120
  121 TAVHNAILED IVFPTEIIGK RTRQATDGRK TIKVFLDNRD ANTVDYKLGS FSSVYHKLTG 180
  181 KNVTFEFPVA TGEGL

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	143.207608
Match:	PF01251.9
Description:	No description for PF01251.9 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits