YRC Public Data Repository - Protein Structure Prediction

Protein:	ATG17_SCHPO
Organism:	Schizosaccharomyces pombe 972h-
Length:	481 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ATG17_SCHPO.

Description	E-value	Query Range	Subject Range
ATG17_NEUCR - Autophagy-related protein 17 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM... ATG17_NEUCR - Autophagy-related protein 17 OS=Neurospora crassa GN=atg-17 PE=3 SV=1	439.0	[0..63]	[447..59]
gi\|49098074, gi\|... - gi\|67540380\|ref\|XP_663964.1\| hypothetical protein AN6360.2 [Aspergillus nidulans FGSC A4], ref\|XP_41... ATG17_EMENI - Autophagy-related protein 17 OS=Emericella nidulans GN=atg17 PE=3 SV=1	438.0	[0..54]	[470..9]
gi\|42555452, gi\|... - gi\|46124265\|ref\|XP_386686.1\| hypothetical protein FG06510.1 [Gibberella zeae PH-1], gi\|42555452\|gb\|E...	428.0	[0..65]	[447..52]
ATG17_MAGGR - Autophagy-related protein 17 OS=Magnaporthe grisea GN=ATG17 PE=3 SV=1 ATG17_MAGO7 - Autophagy-related protein 17 OS=Magnaporthe oryzae (strain 70-15 / ATCC MYA-4617 / FGSC 8958) GN=ATG...	426.0	[0..68]	[447..32]
ATG17_ASPTN - Autophagy-related protein 17 OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=atg17 PE=3 SV=...	346.0	[0..57]	[469..15]
ATG17_ASPOR - Autophagy-related protein 17 OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) GN=atg17 PE=3 SV=1 ATG17_ASPOR - Autophagy-related protein 17 OS=Aspergillus oryzae GN=atg17 PE=3 SV=1	343.0	[0..69]	[479..27]
gi\|25463383, gi\|... - gi\|3859702\|emb\|CAA21977.1\| unknown hypothetical protein [Candida albicans], pir\|\|T52157 hypothetical...	329.0	[0..63]	[431..4]
ATG17_CANAL - Autophagy-related protein 17 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=ATG17 PE=3 SV=1 ATG17_CANAL - Autophagy-related protein 17 OS=Candida albicans GN=ATG17 PE=3 SV=1	329.0	[0..63]	[431..4]
gi\|159129798 - gi\|159129798\|gb\|EDP54912.1\| kinase activator (Atg17), putative [Aspergillus fumigatus A1163] ATG17_ASPFU - Autophagy-related protein 17 OS=Aspergillus fumigatus GN=atg17 PE=3 SV=1 ATG17_ASPFU - Autophagy-related protein 17 OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FG...	312.0	[0..65]	[475..24]
ATG17_YEAST - Autophagy-related protein 17 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ATG17 PE=1 ... ATG17 - Scaffold protein responsible for phagophore assembly site organization; regulatory subunit of an aut... gi\|207342702 - gi\|207342702\|gb\|EDZ70384.1\| YLR423Cp-like protein [Saccharomyces cerevisiae AWRI1631]	300.0	[0..144]	[451..125]

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Predicted Domain #1

Region A:
Residues: [1-481]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MCYMRSLAIF QFRRKHTTLL HNQFLCIKGP FEKFVGRYIY KYISILIYLY SFFSSGVHTR  60
   61 GIQFYRVSAV MELLQQWTQQ AKAALTQARQ LCGDAHKFNE DAKTDLRNSI KQHQQLKELA 120
  121 KLTASQCTRL DSSTALIKQL LDLVQNYPTF NQLNVLHDRL ESSLKRLRDC TLDPALGSEY 180
  181 TNLYAFVDDT ALEDLKTRLR GVTDGVWNAF EKLAGLLEED LCANYHKRLE AVSLDFLPPA 240
  241 YNDTAEELAD LLLQVAQHYD QCSEALNIYD TLSDAEKKDL QEVLQSDSNH VPSVLTELRS 300
  301 GLDQTIHYFN AVQSYKSKVD SATSILEALA EELNKNQLTN QRHEAAHELM RAQTGLEIPQ 360
  361 LAQELVQLER HYTHFAKAYT ALLQEIHRRQ TYENCVRSIV DEFVGRLEKE QQAEAKCRID 420
  421 FFNQYGDYLP QTLWGAVTDP PLHFEIIEHQ YTELPNVKVI PDKNDKKSKQ REKSSTTASK 480
  481 R

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.14
Match:	1ciiA
Description:	COLICIN IA
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits