YRC Public Data Repository - Protein Structure Prediction

Protein:	SMD2_SCHPO
Organism:	Schizosaccharomyces pombe 972h-
Length:	115 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SMD2_SCHPO.

Description	E-value	Query Range	Subject Range
gi\|42553705, gi\|... - gi\|46125281\|ref\|XP_387194.1\| hypothetical protein FG07018.1 [Gibberella zeae PH-1], gi\|42553705\|gb\|E...	124.0	[0..3]	[109..46]
gi\|38103571, gi\|... - gi\|39944004\|ref\|XP_361539.1\| hypothetical protein MGG_04013 [Magnaporthe grisea 70-15], gb\|EAA50254....	122.0	[0..1]	[109..6]
snr-4 - small nuclear ribonucleoprotein D2 like status:Confirmed UniProt:Q18786 protein_id:CAB01413.1	121.0	[0..6]	[115..5]
gi\|66500455 - gi\|66500455\|ref\|XP_397475.2\| PREDICTED: similar to CG1249-PA isoform 1 [Apis mellifera]	119.0	[0..5]	[115..4]
gi\|134108164, gi... - gi\|50259967\|gb\|EAL22633.1\| hypothetical protein CNBB2650 [Cryptococcus neoformans var. neoformans B-...	118.0	[0..1]	[114..55]
gi\|44986307 - gi\|44986307\|gb\|AAS54767.1\| AGR277Wp [Ashbya gossypii ATCC 10895] gi\|44986307, gi\|... - gi\|45201373\|ref\|NP_986943.1\| AGR277Wp [Ashbya gossypii ATCC 10895], gi\|44986307\|gb\|AAS54767.1\| AGR27...	117.0	[0..1]	[114..1]
gi\|111060726 - gi\|111060726\|gb\|EAT81846.1\| hypothetical protein SNOG_10452 [Phaeosphaeria nodorum SN15]	117.0	[0..1]	[109..6]
gi\|115928632, gi... - gi\|115928632\|ref\|XP_001177104.1\| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus], gi...	117.0	[0..4]	[115..3]
gi\|22203734 - gi\|22203734\|gb\|AAM94277.1\| small nuclear ribonucleoprotein D2-like protein [Chlamys farreri]	116.0	[0..1]	[115..1]
gi\|49656127 - gi\|49656127\|emb\|CAG88765.1\| DEHA2F02156p [Debaryomyces hansenii] gi\|50423747, gi\|... - gi\|50423747\|ref\|XP_460458.1\| hypothetical protein DEHA0F02420g [Debaryomyces hansenii CBS767], gi\|49...	115.0	[0..1]	[115..1]

Back

Predicted Domain #1

Region A:
Residues: [1-115]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MADLVDKPRS ELSEIELARL EEYEFSAGPL SVLQQAVKNH DQVLINCRNN KKLLARVKAF  60
   61 DRHSNMVLEN VKEMWTEKKR TASGKKGKAI NKDRFISKMF LRGDGVVLVV RIPSA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	25.154902
Match:	1b34B
Description:	D2 core SNRNP protein
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
	9.36615441177233	bayes_pls_golite062009
RNA binding	5.81718051012035	bayes_pls_golite062009
nucleic acid binding	2.69031444148163	bayes_pls_golite062009
mRNA binding	2.57166143288861	bayes_pls_golite062009
binding	2.44117021254507	bayes_pls_golite062009
protein binding	0.318488892917007	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: