YRC Public Data Repository - Protein Structure Prediction

Protein:	POM1_SCHPO
Organism:	Schizosaccharomyces pombe 972h-
Length:	1087 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for POM1_SCHPO.

Description	E-value	Query Range	Subject Range
ERK1_DICDI - Extracellular signal-regulated kinase 1 - Dictyostelium discoideum (Slime mold)	353.0	[0..669]	[1064..1]
gi\|49671277, gi\|... - gi\|54262236\|ref\|NP_001005824.1\| mitogen-activated protein kinase 14 [Xenopus (Silurana) tropicalis],...	352.0	[0..675]	[1047..1]
MK14A_CYPCA - Mitogen-activated protein kinase 14A OS=Cyprinus carpio GN=mapk14a PE=1 SV=1	352.0	[0..675]	[1039..1]
gi\|66807963, gi\|... - gi\|66807963\|ref\|XP_637704.1\| extracellular signal-regulated protein kinase [Dictyostelium discoideum... ERK1_DICDI - Extracellular signal-regulated kinase 1 OS=Dictyostelium discoideum GN=erkA PE=2 SV=2	349.0	[0..560]	[1064..10]
gi\|119574144, gi... - gi\|21237745\|ref\|NP_620709.1\| mitogen-activated protein kinase 9 isoform JNK2 beta2 [Homo sapiens], g... gi\|114603872 - gi\|114603872\|ref\|XP_001154742.1\| PREDICTED: mitogen-activated protein kinase 9 isoform 6 [Pan troglo... gi\|168277430 - gi\|168277430\|dbj\|BAG10693.1\| mitogen-activated protein kinase 9 [synthetic construct]	349.0	[0..674]	[1087..1]
MK14A_DANRE - Mitogen-activated protein kinase 14A OS=Danio rerio GN=mapk14a PE=1 SV=1	349.0	[0..675]	[1039..1]
gi\|33340593 - gi\|33340593\|gb\|AAQ14867.1\|AF329506_1 mitogen-activated protein kinase 2 [Glycine max]	348.0	[0..660]	[1038..19]
MMK1_MEDSA - Mitogen-activated protein kinase homolog MMK1 OS=Medicago sativa GN=MMK1 PE=1 SV=1	348.0	[0..678]	[1038..33]

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Predicted Domain #1

Region A:
Residues: [1-171]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGYLQSQKAV SLGDENTDAL FKLHTSNRKS ANMFGIKSEL LNPSELSAVG SYSNDICPNR  60
   61 QSSSSTAADT SPSTNASNTN ISFPEQEHKD ELFMNVEPKG VGSSMDNHAI TIHHSTGNGL 120
  121 LRSSFDHDYR QKNSPRNSIH RLSNISIGNN PIDFESSQQN NPSSLNTSSH H

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.17
Match:	1pk8A
Description:	Crystal Structure of Rat Synapsin I C Domain Complexed to Ca.ATP
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [172-349]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RTSSISNSKS FGTSLSYYNR SSKPSDWNQQ NNGGHLSGVI SITQDVSSVP LQSSVFSSGN  60
   61 HAYHASMAPK RSGSWRHTNF HSTSHPRAAS IGNKSGIPPV PTIPPNIGHS TDHQHPKANI 120
  121 SGSLTKSSSE SKNLSTIQSP LKTSNSFFKE LSPHSQITLS NVKNNHSHVG SQTKSHSF

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [350-568]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ATPSVFDNNK PVSSDNHNNT TTSSQVHPDS RNPDPKAAPK AVSQKTNVDG HRNHEAKHGN  60
   61 TVQNESKSQK SSNKEGRSSR GGFFSRLSFS RSSSRMKKGS KAKHEDAPDV PAIPHAYIAD 120
  121 SSTKSSYRNG KKTPTRTKSR MQQFINWFKP SKERSSNGNS DSASPPPVPR LSITRSQVSR 180
  181 EPEKPEEIPS VPPLPSNFKD KGHVPQQRSV SYTPKRSSD

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #4

Region A:
Residues: [569-636]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TSESLQPSLS FASSNVLSEP FDRKVADLAM KAINSKRINK LLDDAKVMQS LLDRACIITP  60
   61 VRNTEVQL

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #5

Region A:
Residues: [637-1010]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 INTAPLTEYE QDEINNYDNI YFTGLRNVDK RRSADENTSS NFGFDDERGD YKVVLGDHIA  60
   61 YRYEVVDFLG KGSFGQVLRC IDYETGKLVA LKIIRNKKRF HMQALVETKI LQKIREWDPL 120
  121 DEYCMVQYTD HFYFRDHLCV ATELLGKNLY ELIKSNGFKG LPIVVIKSIT RQLIQCLTLL 180
  181 NEKHVIHCDL KPENILLCHP FKSQVKVIDF GSSCFEGECV YTYIQSRFYR SPEVILGMGY 240
  241 GTPIDVWSLG CIIAEMYTGF PLFPGENEQE QLACIMEIFG PPDHSLIDKC SRKKVFFDSS 300
  301 GKPRPFVSSK GVSRRPFSKS LHQVLQCKDV SFLSFISDCL KWDPDERMTP QQAAQHDFLT 360
  361 GKQDVRRPNT APAR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	69.30103
Match:	2exeA
Description:	Crystal structure of the phosphorylated CLK3
Matching Structure (courtesy of the PDB):

Predicted Domain #6

Region A:
Residues: [1011-1087]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QKFARPPNIE TAPIPRPLPN LPMEYNDHTL PSPKEPSNQA SNLVRSSDKF PNLLTNLDYS  60
   61 IISDNGFLRK PVEKSRP

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits