YRC Public Data Repository - Protein Structure Prediction

Protein:	ALLC_SCHPO
Organism:	Schizosaccharomyces pombe 972h-
Length:	342 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ALLC_SCHPO.

Description	E-value	Query Range	Subject Range
gi\|74019842, gi\|... - gi\|74019842\|ref\|ZP_00690454.1\| Allantoicase [Burkholderia ambifaria AMMD], gi\|72607487\|gb\|EAO43447.1...	553.0	[0..6]	[338..3]
gi\|78066745, gi\|... - gi\|78066745\|ref\|YP_369514.1\| allantoicase [Burkholderia sp. 383], gi\|77967490\|gb\|ABB08870.1\| Allanto...	553.0	[0..6]	[338..3]
gi\|84354973, gi\|... - gi\|84354973\|ref\|ZP_00979866.1\| COG4266: Allantoicase [Burkholderia cenocepacia PC184], gi\|254247936\|... gi\|67666198, gi\|... - gi\|67666198\|ref\|ZP_00463450.1\| Allantoicase [Burkholderia cenocepacia HI2424], gi\|67100255\|gb\|EAM174... gi\|67658746, gi\|... - gi\|67658746\|ref\|ZP_00456115.1\| Allantoicase [Burkholderia cenocepacia AU 1054], gi\|67093593\|gb\|EAM11...	552.0	[0..6]	[338..3]
gi\|124894732, gi... - gi\|84362092\|ref\|ZP_00986728.1\| COG4266: Allantoicase [Burkholderia dolosa AUO158], gi\|254252123\|ref\|...	550.0	[0..6]	[338..3]
gi\|67529230, gi\|... - gi\|67549459\|ref\|ZP_00427321.1\| Allantoicase [Burkholderia vietnamiensis G4], gi\|67529230\|gb\|EAM26103...	549.0	[0..6]	[338..3]
gi\|91783883, gi\|... - gi\|91783883\|ref\|YP_559089.1\| allantoicase [Burkholderia xenovorans LB400], gi\|91687837\|gb\|ABE31037.1...	548.0	[0..6]	[341..3]
gi\|126452590, gi... - gi\|226830771\|ref\|YP_001066690.3\| allantoicase [Burkholderia pseudomallei 1106a], gi\|126452590\|ref\|YP... gi\|254297256, gi... - gi\|254297256\|ref\|ZP_04964709.1\| allantoicase [Burkholderia pseudomallei 406e], gi\|194570773\|ref\|YP_0... gi\|254197844, gi... - gi\|254197844\|ref\|ZP_04904266.1\| allantoicase [Burkholderia pseudomallei S13], gi\|194514977\|ref\|YP_00... gi\|157936920, gi... - gi\|254189241\|ref\|ZP_04895752.1\| allantoicase [Burkholderia pseudomallei Pasteur 52237], gi\|194510767... gi\|242138223, gi... - gi\|242314984\|ref\|ZP_04814000.1\| allantoicase [Burkholderia pseudomallei 1106b], gi\|242138223\|gb\|EES2... gi\|226200114, gi... - gi\|226200114\|ref\|ZP_03795660.1\| allantoicase [Burkholderia pseudomallei Pakistan 9], gi\|225927798\|gb... gi\|76810091, gi\|... - gi\|76810091\|ref\|YP_333923.1\| allantoicase [Burkholderia pseudomallei 1710b], gi\|76579544\|gb\|ABA49019... gi\|254261685, gi... - gi\|254261685\|ref\|ZP_04952739.1\| allantoicase [Burkholderia pseudomallei 1710a], gi\|254220374\|gb\|EET0...	546.0	[0..7]	[338..51]
gi\|83619471 - gi\|83619471\|ref\|ZP_00929905.1\| COG4266: Allantoicase [Burkholderia mallei FMH] gi\|83625808 - gi\|83625808\|ref\|ZP_00936037.1\| COG4266: Allantoicase [Burkholderia mallei JHU] gi\|67638906, gi\|... - gi\|67638906\|ref\|ZP_00437841.1\| COG4266: Allantoicase [Burkholderia mallei 10399], gi\|100918522\|ref\|Z... gi\|167894820 - gi\|167894820\|ref\|ZP_02482222.1\| allantoicase [Burkholderia pseudomallei 7894] gi\|167903211 - gi\|167903211\|ref\|ZP_02490416.1\| allantoicase [Burkholderia pseudomallei NCTC 13177] gi\|167000605 - gi\|167000605\|ref\|ZP_02266416.1\| allantoicase [Burkholderia mallei PRL-20] gi\|167816326 - gi\|167816326\|ref\|ZP_02448006.1\| allantoicase [Burkholderia pseudomallei 91] gi\|167911449 - gi\|167911449\|ref\|ZP_02498540.1\| allantoicase [Burkholderia pseudomallei 112] gi\|167919461 - gi\|167919461\|ref\|ZP_02506552.1\| allantoicase [Burkholderia pseudomallei BCC215] gi\|162320518 - gi\|162320518\|ref\|YP_001029241.2\| allantoicase [Burkholderia mallei NCTC 10229] ALLC1_BURPS - Probable allantoicase 1 OS=Burkholderia pseudomallei (strain K96243) GN=alc1 PE=3 SV=1 ALLC1_BURMA - Probable allantoicase 1 OS=Burkholderia mallei GN=alc1 PE=3 SV=1 gi\|67641666 - gi\|67641666\|ref\|ZP_00440435.1\| COG4266: Allantoicase [Burkholderia mallei GB8 horse 4] ALLC1_BURMA - Probable allantoicase 1 OS=Burkholderia mallei (strain ATCC 23344) GN=alc1 PE=3 SV=1 ALLC1_BURPS - Probable allantoicase 1 OS=Burkholderia pseudomallei GN=alc1 PE=3 SV=1 gi\|162139489, gi... - gi\|67648216\|ref\|ZP_00446448.1\| COG4266: Allantoicase [Burkholderia mallei NCTC 10247], gi\|162139489\|... gi\|67738102, gi\|... - gi\|67738102\|ref\|ZP_00488800.1\| COG4266: Allantoicase [Burkholderia pseudomallei 668], gi\|162200297\|r... gi\|84522457, gi\|... - gi\|84522457\|ref\|ZP_01009593.1\| COG4266: Allantoicase [Burkholderia mallei SAVP1], gi\|162139486\|ref\|Y... gi\|85067413 - gi\|85067413\|ref\|ZP_01028266.1\| COG4266: Allantoicase [Burkholderia mallei 10229] gi\|100266622, gi... - gi\|87317250\|ref\|ZP_01098260.1\| COG4266: Allantoicase [Burkholderia mallei 2002721280], gi\|100266622\|...	546.0	[0..6]	[338..3]
gi\|82532329, gi\|... - gi\|82532329\|ref\|ZP_00891541.1\| COG4266: Allantoicase [Burkholderia pseudomallei 1106a], gi\|161986644... gi\|90293891, gi\|... - gi\|90293891\|ref\|ZP_01213489.1\| hypothetical protein Bpse17_02001471 [Burkholderia pseudomallei 1710a... gi\|100059248, gi... - gi\|67753250\|ref\|ZP_00492192.1\| COG4266: Allantoicase [Burkholderia pseudomallei Pasteur], gi\|1000592... gi\|161355275, gi... - gi\|82534782\|ref\|ZP_00893810.1\| hypothetical protein Bpse110_02003980 [Burkholderia pseudomallei 1106... gi\|83679931, gi\|... - gi\|83679931\|ref\|ZP_00941640.1\| COG4266: Allantoicase [Burkholderia pseudomallei 406e], gi\|100235587\|... gi\|162210072 - gi\|162210072\|ref\|YP_333923.2\| allantoicase [Burkholderia pseudomallei 1710b] gi\|167739112 - gi\|167739112\|ref\|ZP_02411886.1\| allantoicase [Burkholderia pseudomallei 14] gi\|100126163, gi... - gi\|67763130\|ref\|ZP_00501827.1\| COG4266: Allantoicase [Burkholderia pseudomallei S13], gi\|100126163\|r... gi\|167824705 - gi\|167824705\|ref\|ZP_02456176.1\| allantoicase [Burkholderia pseudomallei 9] gi\|167846234 - gi\|167846234\|ref\|ZP_02471742.1\| allantoicase [Burkholderia pseudomallei B7210]	545.0	[0..7]	[338..4]
gi\|83653797, gi\|... - gi\|83719972\|ref\|YP_442593.1\| allantoicase [Burkholderia thailandensis E264], gi\|83653797\|gb\|ABC37860...	543.0	[0..6]	[338..50]

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Predicted Domain #1

Region A:
Residues: [1-342]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSVENVERLS PEQADAFFGQ SSVDLISRAL GGQVLGCSDD FFASCENLIN PADPIRKAGV  60
   61 FVETGAWYDG WETRRHNTAP CDWVIVKLGP SSGRVTGCEI DTTFFNGNHA PEVSVEAAFL 120
  121 PEGNPDAKTN WTPILPKLPC GPTQRHIYRF KEIPQQNFTH VRLCMYPDGG IARFRLYGNV 180
  181 VPVFPADLDA RLDLAHMYLG GLVVQCSDQH FGKKDNLLLP GRGVNMGDGW ETARSREKGH 240
  241 VDWVIVKLGA RGYIDDALID TNHFKGNYPK EVILEAIDSP DHIPGPDAQW VTILPARKLG 300
  301 PHMEHVFTNL QNNSTPMTHV RMIIIPDGGV KRLRIYGRRA AN

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	130.0
Match:	1o59A
Description:	Crystal structure of Allantoicase (yir029w) from Saccharomyces cerevisiae at 2.40 A resolution
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
allantoicase activity	3.21785739891956	bayes_pls_golite062009
binding	1.56884951913654	bayes_pls_golite062009
nucleic acid binding	0.718803937693854	bayes_pls_golite062009
DNA binding	0.547507778308479	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: