Protein: | LIN1_SCHPO |
Organism: | Schizosaccharomyces pombe 972h- |
Length: | 408 amino acids |
Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for LIN1_SCHPO.
Description | E-value | Query Range |
Subject Range |
|
194.0 | [0..3] | [358..3993] |
|
180.0 | [0..3] | [346..4551] |
|
178.0 | [0..76] | [400..14] |
|
176.0 | [0..76] | [400..14] |
|
169.0 | [0..76] | [400..18] |
|
168.0 | [0..75] | [400..12] |
|
162.0 | [0..76] | [400..14] |
Region A: Residues: [1-250] |
1 11 21 31 41 51 | | | | | | 1 MKRTLRNPGN SSTVGDVHDV FFEYDVSNVG RKRPRTKEEG YYESESEEDE DQILNKEKKE 60 61 GQSEDMFSDT SEDEKRTLPN DEAQKRRDFI ENGDAERLAH KGLRNKEVLN DDSDDEDDNG 120 121 KYSKLRYEDI EGQEDTNQAN DLDADEEGSE ISVPSSPKRM SFNLKEDMEE GDFDENGNFI 180 181 RKNYDPESQY DAWLNGSVSN KKSIAAAREA EQKRKEMENR RRNQELEEFS KLPFSTVPEA 240 241 LSFFIARMER |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
Region A: Residues: [251-336] |
1 11 21 31 41 51 | | | | | | 1 DESILEFLQR QSGNKKSYKK KKNNTAEGIS PERKSADAFR KKLIELITAG LTFLEDKIGK 60 61 EDIYSETRES LQRIYQKLTS NSWSSP |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
View | Download | 0.811 | 0.021 | chromatin | a.7.1 | Spectrin repeat |
View | Download | 0.626 | 0.021 | chromatin | a.24.3 | Cytochromes |
View | Download | 0.619 | 0.021 | chromatin | a.47.2 | t-snare proteins |
View | Download | 0.624 | 0.021 | chromatin | f.36.1 | Neurotransmitter-gated ion-channel pransmembrane pore |
View | Download | 0.668 | 0.021 | chromatin | a.7.1 | Spectrin repeat |
Region A: Residues: [337-408] |
1 11 21 31 41 51 | | | | | | 1 VSYDDSNSSQ YNFKWEFDDK TYGPYTASQI QAWSNEGYFT DAKHAAFIQL ANMDEWMYPN 60 61 NICFCDVVSL KK |
Detection Method: | |
Confidence: | 18.09691 |
Match: | 1syxB |
Description: | The crystal structure of a binary U5 snRNP complex |
Matching Structure (courtesy of the PDB): |
Term | Confidence | Notes |
binding | 0.676147090295427 | bayes_pls_golite062009 |