YRC Public Data Repository - Protein Structure Prediction

Protein:	RCL1_SCHPO
Organism:	Schizosaccharomyces pombe 972h-
Length:	363 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RCL1_SCHPO.

Description	E-value	Query Range	Subject Range
gi\|50761706 - gi\|50761706\|ref\|XP_424808.1\| PREDICTED: similar to RNA 3-terminal phosphate cyclase-like protein [Ga...	461.0	[0..1]	[363..1]
gi\|147904523, gi... - gi\|28277297\|gb\|AAH45026.1\| MGC53171 protein [Xenopus laevis], gi\|147904523\|ref\|NP_001079592.1\| simil...	460.0	[0..2]	[363..3]
RCL1_MOUSE - RNA 3'-terminal phosphate cyclase-like protein OS=Mus musculus GN=Rcl1 PE=2 SV=1	449.0	[0..7]	[363..8]
gi\|190690773, gi... - gi\|190690773\|gb\|ACE87161.1\| RNA terminal phosphate cyclase-like 1 protein [synthetic construct], gi\|... RCL1 - RNA terminal phosphate cyclase-like 1	448.0	[0..7]	[363..8]
gi\|109111645 - gi\|109111645\|ref\|XP_001084388.1\| PREDICTED: RNA cyclase homolog [Macaca mulatta]	448.0	[0..5]	[363..6]
gi\|73946912 - gi\|73946912\|ref\|XP_541299.2\| PREDICTED: similar to RNA cyclase homolog [Canis familiaris]	446.0	[0..7]	[363..112]

Back

Predicted Domain #1

Region A:
Residues: [1-363]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTGQLKRFK GCEYLTHRLV LATLSGTPIR VEGIYPDEAD PGVKDYQVSF LRLLEKLTNG  60
   61 SVIEISYTGT SFIYRPGNII GGRVVHDCPT TKGIGYFLEP ILILCLFAKT PTSLTLTGVT 120
  121 SSNEDIGVDV LRTSVLPSLQ KRFQVGDELE LRILKRGSAP GGGGEVNFLC PVIKESLPPI 180
  181 RLSEFGRVFR IRGIASSTRV SPAFANRLVE SARGVLNPFI PDVFIYTDVR RGDECGNSPG 240
  241 YSITLVAETN KGCSYAAEHC GEAGETPEDV GSFCAKKLLE VIESGGCVDP YTQPSTLTGM 300
  301 LLSSEDVNTI VVGQLGITSQ LVVFLRDVKA LFNCEYRFKE LESGQVEMSC LGKGYLNVNR 360
  361 RIQ

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	95.221849
Match:	1qmhA
Description:	RNA 3'-terminal phosphate cyclase, RPTC, insert domain; RNA 3'-terminal phosphate cyclase, RPTC
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	2.54689525592227	bayes_pls_golite062009
transferase activity	1.7007536630883	bayes_pls_golite062009
transferase activity, transferring alkyl or aryl (other than methyl) groups	1.24131488513793	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: