YRC Public Data Repository - Protein Structure Prediction

Protein:	RCE1_SCHPO
Organism:	Schizosaccharomyces pombe 972h-
Length:	271 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RCE1_SCHPO.

Description	E-value	Query Range	Subject Range
gi\|46111431, gi\|... - gi\|46111431\|ref\|XP_382773.1\| hypothetical protein FG02597.1 [Gibberella zeae PH-1], gi\|42544366\|gb\|E...	216.0	[0..2]	[256..11]
gi\|67540716, gi\|... - gi\|67540716\|ref\|XP_664132.1\| hypothetical protein AN6528.2 [Aspergillus nidulans FGSC A4], ref\|XP_41...	212.0	[0..6]	[256..32]
fce-2 - status:Confirmed UniProt:Q86GD1 protein_id:CAD91634.1	208.0	[0..1]	[248..1]
gi\|34482028 - gi\|34482028\|tpg\|DAA01788.1\| TPA: TPA_exp: CaaX protease [Emericella nidulans]	206.0	[0..8]	[256..4]
gi\|169776955 - gi\|169776955\|ref\|XP_001822943.1\| hypothetical protein [Aspergillus oryzae RIB40] gi\|83771680 - gi\|83771680\|dbj\|BAE61810.1\| unnamed protein product [Aspergillus oryzae] gi\|238494034, gi... - gi\|238494034\|ref\|XP_002378253.1\| CaaX prenyl proteinase Rce1 [Aspergillus flavus NRRL3357], gi\|22069...	205.0	[0..7]	[256..25]
Sras-PA - The gene severas is referred to in FlyBase by the symbol Dmel\Sras (CG4852, FBgn0029121). It is a pr... gi\|220954262, gi... - gi\|220954262\|gb\|ACL89674.1\| Sras-PA [synthetic construct], gi\|220944384\|gb\|ACL84735.1\| Sras-PA [synt...	201.0	[0..8]	[250..35]
gi\|119196557, gi... - gi\|90307668\|gb\|EAS37299.1\| hypothetical protein CIMG_02653 [Coccidioides immitis RS], gi\|119196557\|r...	198.0	[0..3]	[256..25]
gi\|114638802 - gi\|114638802\|ref\|XP_508581.2\| PREDICTED: prenyl protein peptidase RCE1 isoform 3 [Pan troglodytes] gi\|109105244 - gi\|109105244\|ref\|XP_001107995.1\| PREDICTED: prenyl protein peptidase RCE1 isoform 2 [Macaca mulatta]	197.0	[0..10]	[224..45]
gi\|56585160 - gi\|56585160\|gb\|AAH87629.1\| Rce1 protein [Rattus norvegicus]	196.0	[0..8]	[224..42]

Back

Predicted Domain #1

Region A:
Residues: [1-95]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRVYLISFFF TAIYVVSLYT FPVARPRPSL NRNDPKVITA RCISVLLASS VCCILTRLII  60
   61 GPSLNVFTFP TDQVLKSLLH AATIFIGPLY EVWIV

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [96-271]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DKEYRLFFIH LKDCLSNAIA WRNIIIGPLS EELTFRCCIV PICEAAGWSR LKIIFVAPLL  60
   61 FGMAHIHHTY EFLLAYPNAY IAAALQTVVQ FSYTTVFGWY TTHLFLSTHS LFPSFLVHAF 120
  121 CNSMGLPTLY GKIGNRNQTR IYYTLLLLGV LIFYMTWGIT DFNNHQDFEP RLVPLN

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	29.721246
Match:	PF02517.7
Description:	No description for PF02517.7 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits