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View Structure Prediction Details

Protein: DBP4_SCHPO
Organism: Schizosaccharomyces pombe 972h-
Length: 735 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for DBP4_SCHPO.

Description E-value Query
Range		 Subject
Range
DBP4_ASHGO - ATP-dependent RNA helicase DBP4 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRR...
DBP4_ASHGO - ATP-dependent RNA helicase DBP4 OS=Ashbya gossypii GN=DBP4 PE=3 SV=1
 417.0 [0..4] [732..3]
gi|21627812 - gi|21627812|emb|CAD37144.1| probable ATP-dependent RNA helicase [Aspergillus fumigatus]
 413.0 [0..3] [733..11]
DBP4_GIBZE - ATP-dependent RNA helicase DBP4 OS=Gibberella zeae (strain PH-1 / ATCC MYA-4620 / FGSC 9075 / NRRL 3...
DBP4_GIBZE - ATP-dependent RNA helicase DBP4 OS=Gibberella zeae GN=DBP4 PE=3 SV=1
 409.0 [0..2] [732..11]
gi|1619952 - gi|1619952|gb|AAB17005.1| putative RNA helicase [Saccharomyces cerevisiae]
 403.0 [0..5] [732..3]
DBP4_EMENI - ATP-dependent RNA helicase dbp4 OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / N...
DBP4_EMENI - ATP-dependent RNA helicase dbp4 OS=Emericella nidulans GN=dbp4 PE=3 SV=1
 401.0 [0..5] [733..14]
DBP4_ASPFU - ATP-dependent RNA helicase dbp4 OS=Aspergillus fumigatus GN=dbp4 PE=3 SV=1
DBP4_ASPFU - ATP-dependent RNA helicase dbp4 OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 /...
gi|159124561 - gi|159124561|gb|EDP49679.1| DEAD box RNA helicase (Hca4), putative [Aspergillus fumigatus A1163]
 399.0 [0..3] [733..11]
DBP4_CANAL - ATP-dependent RNA helicase DBP4 OS=Candida albicans GN=DBP4 PE=3 SV=1
DBP4_CANAL - ATP-dependent RNA helicase DBP4 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=DBP4 PE=3 SV=...
 399.0 [0..1] [733..5]
DBP4_MAGO7 - ATP-dependent RNA helicase DBP4 OS=Magnaporthe oryzae (strain 70-15 / ATCC MYA-4617 / FGSC 8958) GN=...
DBP4_MAGGR - ATP-dependent RNA helicase DBP4 OS=Magnaporthe grisea GN=DBP4 PE=3 SV=1
 398.0 [0..2] [732..12]

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Predicted Domain #1
Region A:
Residues: [1-149] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPKNRTGRSR EAREKKRKEE EEEIEELNSQ IEALSETVDH FAELPLTQPT KSALKNAHFI  60
   61 TLTEIQKQCI PSALKGRDIL GAAKTGSGKT LAFIVPLIEN LYRKKWTSLD GLGALVISPT 120
  121 RELAIQTFET LVKIGRLHSF SAGLIIGGN

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 51.09691
Match: 2pl3A
Description: No description for 2pl3A was found.

Predicted Domain #2
Region A:
Residues: [150-255] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NYKEEKERLS RMNILVCTPG RLLQHIDQAV NFDTSGLQML ILDEADRILD MGFRTTLDAI  60
   61 VSSLPVHRQT MLFSATQTKS VKDLARLSLQ NPDFISVHEN DTSSTP

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 5.27
Match: 2pl3A
Description: No description for 2pl3A was found.

Predicted Domain #3
Region A:
Residues: [256-393] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SNLNQFYLTV PLTEKLDILF GFIRTHLKFK TIVFLSSCKQ VRFVYETFRR MRPGISLLHL  60
   61 HGKQKQTTRT EVTAKFTSSR HVVLFCTDIV ARGLDFPAVD WVIQLDAPED VDTYIHRVGR 120
  121 TARYNRSGNA LLLLLPSE

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 31.221849
Match: 2hjvA
Description: No description for 2hjvA was found.

Predicted Domain #4
Region A:
Residues: [394-735] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EAFLKRLESK KIAVERINVK DGKKTSIRNQ LQNLCFKDND IKYIGQKAFI SYLRSIYLQK  60
   61 DKDVFQLDKL PVEAFADSLG LPGTPKITFG KLKNHSQSQK DYNSSTSLDS SEESEVDVEN 120
  121 KQNVRTKYDR IFERKNQDVL AAHRQRLVEV NSDEDDGDFL QVKRVDHDLP EETGERFNAN 180
  181 SKRKEKMASS KKAMLKYKKS ADKVYFDDEG NAIPFYAMNT EDTFQKAGDP AALIASHLAE 240
  241 ERKALEKADI TDKETVRQKQ LEKKRRRQEL ERITQQDATP DEYVPEGPIV AFVDDELPET 300
  301 SKKQKKWFED NDERDHGGIV EVENLNSLED QEALALKLMG AA

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 6.0
Match: 1i84S
Description: Heavy meromyosin subfragment
Matching Structure (courtesy of the PDB):
YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle