YRC Public Data Repository - Protein Structure Prediction

Protein:	DHSD_SCHPO
Organism:	Schizosaccharomyces pombe 972h-
Length:	186 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for DHSD_SCHPO.

Description	E-value	Query Range	Subject Range
gi\|114192604, gi... - gi\|115397643\|ref\|XP_001214413.1\| succinate dehydrogenase cytochrome b small subunit, mitochondrial p...	200.0	[0..44]	[186..31]
gi\|68468182, gi\|... - gi\|68468182\|ref\|XP_721930.1\| hypothetical protein CaO19.4022 [Candida albicans SC5314], gi\|68467865\|... orf19.4022, orf1... - SDH4 CGDID:CAL0004721 Assembly 19, Contig19-10194 (233377, 232883) CDS, reverse complemented, transl... gi\|238882901 - gi\|238882901\|gb\|EEQ46539.1\| hypothetical protein CAWG_04894 [Candida albicans WO-1]	198.0	[0..32]	[186..16]
gi\|159131680 - gi\|159131680\|gb\|EDP56793.1\| succinate dehydrogenase subunit CybS, putative [Aspergillus fumigatus A1... gi\|70996342, gi\|... - gi\|70996342\|ref\|XP_752926.1\| succinate dehydrogenase subunit CybS [Aspergillus fumigatus Af293], gi\|...	198.0	[0..44]	[186..28]
gi\|49645937, gi\|... - gi\|50545041\|ref\|XP_500072.1\| hypothetical protein [Yarrowia lipolytica], gi\|49645937\|emb\|CAG84001.1\|...	196.0	[0..58]	[186..9]
gi\|39974375, gi\|... - gi\|39974375\|ref\|XP_368578.1\| conserved hypothetical protein [Magnaporthe grisea 70-15], gb\|EAA49008....	193.0	[0..44]	[186..29]
gi\|116182244, gi... - gi\|88186047\|gb\|EAQ93515.1\| hypothetical protein CHGG_01750 [Chaetomium globosum CBS 148.51], gi\|1161...	193.0	[0..36]	[186..23]
gi\|46107720, gi\|... - gi\|46107720\|ref\|XP_380919.1\| hypothetical protein FG00743.1 [Gibberella zeae PH-1], gi\|42547846\|gb\|E...	193.0	[0..47]	[186..42]
gi\|44985116 - gi\|44985116\|gb\|AAS53894.1\| AFR523Cp [Ashbya gossypii ATCC 10895] gi\|44985116, gi\|... - gi\|45199041\|ref\|NP_986070.1\| AFR523Cp [Ashbya gossypii ATCC 10895], gi\|44985116\|gb\|AAS53894.1\| AFR52...	190.0	[0..38]	[185..14]

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Predicted Domain #1

Region A:
Residues: [1-186]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MANNVDTRSA NTNSPTTTTS FSWFTNNMLQ TRLGLGALRQ GRLLFAVKSF STTSVAKIFP  60
   61 PPPQTIKGTV NDAAVFPHHS KLHGSYHWDF ERIIAIAMVP QVMIPLFTGT SHPLMDAALA 120
  121 CTLITHAHLG FESCVIDYFP ARRFKKLSPL MHWILRGCTV LTLIGVYEFN TNDIGLTEGI 180
  181 KKLWKS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	31.154902
Match:	1zoyD
Description:	Crystal Structure of Mitochondrial Respiratory Complex II from porcine heart at 2.4 Angstroms
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits