YRC Public Data Repository - Protein Structure Prediction

Protein:	SDHF2_MOUSE
Organism:	Mus musculus
Length:	164 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SDHF2_MOUSE.

Description	E-value	Query Range	Subject Range
gi\|12850820 - gi\|12850820\|dbj\|BAB28863.1\| unnamed protein product [Mus musculus]	228.0	[0..1]	[164..1]
SDHF2_RAT - Succinate dehydrogenase assembly factor 2, mitochondrial OS=Rattus norvegicus GN=Sdhaf2 PE=2 SV=1	222.0	[0..1]	[163..1]
SDHAF2 - succinate dehydrogenase complex assembly factor 2	215.0	[0..1]	[163..1]
EMI5_PONPY - Protein EMI5 homolog, mitochondrial precursor - Pongo pygmaeus (Orangutan) SDHF2_PONAB - Succinate dehydrogenase assembly factor 2, mitochondrial OS=Pongo abelii GN=SDHAF2 PE=2 SV=1	207.0	[0..1]	[163..1]
SDHF2_BOVIN - Succinate dehydrogenase assembly factor 2, mitochondrial OS=Bos taurus GN=SDHAF2 PE=2 SV=1	207.0	[0..1]	[164..1]
IPI00978638, tr\|... - Uncharacterized protein OS=Homo sapiens PE=4 SV=1, IPI:IPI00978638.2\|TREMBL:F5GYJ5\|ENSEMBL:ENSP00000... gi\|109105927, gi... - gi\|109105927\|ref\|XP_001082231.1\| PREDICTED: similar to CG14757-PA isoform 2 [Macaca mulatta], gi\|109... gi\|9929929 - gi\|9929929\|dbj\|BAB12121.1\| hypothetical protein [Macaca fascicularis]	204.0	[0..11]	[163..1]
gi\|73983849 - gi\|73983849\|ref\|XP_533273.2\| PREDICTED: similar to CG14757-PA [Canis familiaris]	200.0	[0..1]	[164..1]
CG12895-PA, FBpp... - This gene is referred to in FlyBase by the symbol Dmel\CG12895 (CG12895, FBgn0033523). It is a prote...	173.0	[0..6]	[156..6]

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Predicted Domain #1

Region A:
Residues: [1-164]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAVVTLIPTL ARALSKHSLL SPLPSVTSFR RFYRGDSPTD SQKDMIEIPL PPWQERTDES  60
   61 IETKRARLLY ESRKRGMLEN CILLSLFAKE YLHNMTEKQL NLYDRLINEP SNDWDIYYWA 120
  121 TEAKPAPEIF ENEVMELLRE FAKNKNKEQR LRAPDLEYLF EKPH

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	25.0
Match:	2jr5A
Description:	No description for 2jr5A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits