YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|90325028, gi\|...
Organism:	Photobacterium profundum 3TCK
Length:	87 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|90325028, gi|....

Description	E-value	Query Range	Subject Range
LPP_ERWCT - Major outer membrane lipoprotein OS=Erwinia carotovora subsp. atroseptica GN=lpp PE=3 SV=1 gi\|253688819, gi... - gi\|253688819\|ref\|YP_003018009.1\| LPP repeat-containing protein [Pectobacterium carotovorum subsp. ca... gi\|255057139, gi... - gi\|255057139\|ref\|ZP_05309322.1\| LPP repeat-containing protein [Pectobacterium wasabiae WPP163], gi\|2... LPP_PECAS - Major outer membrane lipoprotein OS=Pectobacterium atrosepticum (strain SCRI 1043 / ATCC BAA-672) GN... gi\|227111740 - gi\|227111740\|ref\|ZP_03825396.1\| major outer membrane lipoprotein [Pectobacterium carotovorum subsp. ... gi\|227329829 - gi\|227329829\|ref\|ZP_03833853.1\| major outer membrane lipoprotein [Pectobacterium carotovorum subsp. ...	99.0	[0..1]	[87..1]

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Predicted Domain #1

Region A:
Residues: [1-87]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNRSLTILSG VILSAALMGC SSSDEVDQMQ QLTNKVDMLS DQVSALQSQQ DQMAGAVNDS  60
   61 RAASDAAYQE AMRANQRIDN IAGSYTK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	11.09691
Match:	1eq7A
Description:	Outer membrane lipoprotein
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

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Top Sequence Alignment Hits