YRC Public Data Repository - Protein Structure Prediction

Protein:	LITAF_MOUSE
Organism:	Mus musculus
Length:	161 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for LITAF_MOUSE.

Description	E-value	Query Range	Subject Range
gi\|73959129 - gi\|73959129\|ref\|XP_547124.2\| PREDICTED: similar to LPS-induced TN factor [Canis familiaris]	152.0	[0..1]	[161..1]
LITAF_RAT - Lipopolysaccharide-induced tumor necrosis factor-alpha factor homolog OS=Rattus norvegicus GN=Litaf ...	151.0	[0..1]	[161..1]
gi\|86438436, gi\|... - gi\|86438436\|gb\|AAI12871.1\| Lipopolysaccharide-induced TNF factor [Bos taurus], gi\|114053111\|ref\|NP_0...	150.0	[0..1]	[161..1]
LITAF - lipopolysaccharide-induced TNF factor gi\|190691011, gi... - gi\|190691011\|gb\|ACE87280.1\| lipopolysaccharide-induced TNF factor protein [synthetic construct], gi\|...	144.0	[0..1]	[161..1]
sp\|Q99732-5\|LITA... - Lipopolysaccharide-induced tumor necrosis factor-alpha factor OS=Homo sapiens GN=LITAF PE=1 SV=2 VAR... gi\|114661009, gi... - gi\|114661013\|ref\|XP_001142807.1\| PREDICTED: LPS-induced TNF-alpha factor isoform 4 [Pan troglodytes]...	143.0	[0..1]	[161..1]
gi\|109127600 - gi\|109127600\|ref\|XP_001105141.1\| PREDICTED: similar to LPS-induced TNF-alpha factor [Macaca mulatta]	143.0	[0..1]	[161..1]
gi\|126352314, gi... - gi\|21070125\|gb\|AAM34206.1\|AF503366_1 LPS-induced TNF-alpha factor [Equus caballus], gi\|126352314\|ref...	133.0	[0..1]	[157..1]
CE20251 - WD domain, G-beta repeat status:Partially_confirmed UniProt:Q9XWU3 protein_id:CAA21549.1	126.0	[0..60]	[160..1]
LITAF_XENTR - Lipopolysaccharide-induced tumor necrosis factor-alpha factor homolog OS=Xenopus tropicalis GN=litaf...	124.0	[0..1]	[161..1]

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Predicted Domain #1

Region A:
Residues: [1-161]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSAPGPYQAA AGPSVVPTAP PTYEETVGVN SYYPTPPAPM PGPATGLITG PDGKGMNPPS  60
   61 YYTQPVPVPN ANAIAVQTVY VQQPVSFYDR PVQMCCPSCS KMIVTQLSYN AGALTWLSCG 120
  121 SLCLLGCVAG CCFIPFCVDA LQDVDHYCPN CKALLGTYKR L

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.23
Match:	1z6uA
Description:	Np95-like ring finger protein isoform b [Homo sapiens]
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits