YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: gi|94963111
Organism: synthetic construct
Length: 184 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|94963111.

Description E-value Query
Range
Subject
Range
gi|19070549 - gi|19070549|gb|AAL83914.1|AF350257_1 TRAF3 binding protein [Mus musculus]
4.0E-62 [6..183] [9..175]
gi|109094458 - gi|109094458|ref|XP_001101623.1| PREDICTED: similar to BAFF receptor [Macaca mulatta]
4.0E-53 [1..184] [1..185]
gi|109482630, gi... - gi|109482630|ref|XP_001077542.1| PREDICTED: similar to tumor necrosis factor receptor superfamily, m...
8.0E-52 [17..183] [20..175]
gi|114686776 - gi|114686776|ref|XP_001154286.1| PREDICTED: similar to BAFF receptor [Pan troglodytes]
1.0E-41 [44..184] [220..360]
gi|76616995 - gi|76616995|ref|XP_875941.1| PREDICTED: similar to BAFF receptor [Bos taurus]
3.0E-41 [1..184] [1..185]

Back

Predicted Domain #1
Region A:
Residues: [1-184]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRRGPRSLRG RDAPAPTPCV PAECFDLLVR HCVACGLLRT PRPKPAGASS PAPRTALQPQ  60
   61 ESVGAGAGEA ALPLPGLLFG APALLGLALV LALVLVGLVS WRRRQRRLRG ASSAEAPDGD 120
  121 KDAPEPLDKV IILSPGISDA TAPAWPPPGE DPGTTPPGHS VPVPATELGS TELVTTKTAG 180
  181 PEQQ

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle