YRC Public Data Repository - Protein Structure Prediction

Protein:	AT1B3_MOUSE
Organism:	Mus musculus
Length:	278 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for AT1B3_MOUSE.

Description	E-value	Query Range	Subject Range
ATP1B3 - ATPase, Na+/K+ transporting, beta 3 polypeptide gi\|90075486 - gi\|90075486\|dbj\|BAE87423.1\| unnamed protein product [Macaca fascicularis]	429.0	[0..1]	[278..1]
AT1B3_RABIT - Sodium/potassium-transporting ATPase subunit beta-3 OS=Oryctolagus cuniculus GN=ATP1B3 PE=2 SV=1	423.0	[0..1]	[278..1]
AT1B3_CAVPO - Sodium/potassium-transporting ATPase subunit beta-3 OS=Cavia porcellus GN=ATP1B3 PE=2 SV=1	423.0	[0..1]	[278..1]
AT1B3_RAT - Sodium/potassium-transporting ATPase subunit beta-3 OS=Rattus norvegicus GN=Atp1b3 PE=2 SV=1	423.0	[0..1]	[278..1]
gi\|80477190, gi\|... - gi\|80477190\|gb\|AAI08484.1\| MGC53714 protein [Xenopus laevis], gi\|28302311\|gb\|AAH46716.1\| MGC53714 pr...	422.0	[0..1]	[276..1]
gi\|45360823, gi\|... - gi\|45360823\|ref\|NP_989087.1\| ATPase, Na+/K+ transporting, beta 3 polypeptide [Xenopus (Silurana) tro...	416.0	[0..1]	[276..1]
AT1B3_BOVIN - Sodium/potassium-transporting ATPase subunit beta-3 OS=Bos taurus GN=ATP1B3 PE=2 SV=1	414.0	[0..1]	[278..1]
AT1B3_CHICK - Sodium/potassium-transporting ATPase subunit beta-3 OS=Gallus gallus GN=ATP1B3 PE=2 SV=1	406.0	[0..1]	[276..1]

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Predicted Domain #1

Region A:
Residues: [1-132]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTKTEKKSFH QSLAEWKLFI YNPSSGEFLG RTSKSWGLIL LFYLVFYGFL AALFTFTMWA  60
   61 MLQTLNDEVP KYRDQIPSPG LMVFPKPQTA LEYTFSMSEP QTYKKLVEDL ESFLKPYSVE 120
  121 EQKNLTSCPD GA

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [133-278]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PFIQHGPDYR ACQFPVSLLE ECSGVTDANF GYSKGQPCIL VKMNRIIDLI PDGYPQISCL  60
   61 PKEENATIAT YPEFGVLDLK YFPYYGKKRH VGYRQPLVAV QVKFDSGLNK KEVTVECHIA 120
  121 GTRNLKNKNE RDKFLGRVSF KVTARA

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits