YRC Public Data Repository - Protein Structure Prediction

Protein:	SVP26_SCHPO
Organism:	Schizosaccharomyces pombe 972h-
Length:	227 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SVP26_SCHPO.

Description	E-value	Query Range	Subject Range
gi\|38104650, gi\|... - gi\|39948698\|ref\|XP_363122.1\| hypothetical protein MGG_08706 [Magnaporthe grisea 70-15], gb\|EAA51184....	248.0	[0..1]	[181..1]
gi\|85115788 - gi\|85115788\|ref\|XP_964934.1\| hypothetical protein NCU00778 [Neurospora crassa OR74A] gi\|32408955, gi\|... - gi\|38636402\|emb\|CAE81939.1\| related to transmembrane protein Tex-261 [Neurospora crassa], gi\|3240895...	246.0	[0..1]	[176..1]
gi\|83767111 - gi\|83767111\|dbj\|BAE57250.1\| unnamed protein product [Aspergillus oryzae] gi\|169769565 - gi\|169769565\|ref\|XP_001819252.1\| hypothetical protein [Aspergillus oryzae RIB40]	237.0	[0..1]	[194..1]
gi\|49640537, gi\|... - gi\|50302937\|ref\|XP_451406.1\| unnamed protein product [Kluyveromyces lactis], gi\|49640537\|emb\|CAH0299... gi\|49640537 - gi\|49640537\|emb\|CAH02994.1\| KLLA0A09295p [Kluyveromyces lactis]	229.0	[0..2]	[198..1]
gi\|44984655, gi\|... - gi\|45198645\|ref\|NP_985674.1\| AFR127Wp [Ashbya gossypii ATCC 10895], gi\|44984655\|gb\|AAS53498.1\| AFR12... gi\|44984655 - gi\|44984655\|gb\|AAS53498.1\| AFR127Wp [Ashbya gossypii ATCC 10895]	228.0	[0..2]	[204..1]
gi\|115400886, gi... - gi\|115400886\|ref\|XP_001216031.1\| conserved hypothetical protein [Aspergillus terreus NIH2624], gi\|11...	228.0	[0..1]	[190..1]
gi\|240106540 - gi\|240106540\|gb\|EER24728.1\| hypothetical protein CPC735_000720 [Coccidioides posadasii C735 delta SO... gi\|90302154, gi\|... - gi\|90302154\|gb\|EAS31785.1\| hypothetical protein CIMG_07264 [Coccidioides immitis RS], gi\|119185101\|r...	224.0	[0..1]	[191..1]
gi\|169601178, gi... - gi\|169601178\|ref\|XP_001794011.1\| hypothetical protein SNOG_03447 [Phaeosphaeria nodorum SN15], gi\|11...	223.0	[0..1]	[182..1]
TEX261 - testis expressed 261 gi\|114578017 - gi\|114578017\|ref\|XP_001146153.1\| PREDICTED: testis expressed sequence 261 isoform 1 [Pan troglodytes...	220.0	[0..1]	[205..1]
gi\|238878441 - gi\|238878441\|gb\|EEQ42079.1\| conserved hypothetical protein [Candida albicans WO-1] orf19.1160, orf1... - orf19.1160 CGDID:CAL0002067 Assembly 19, Contig19-10097 (41395, 40748) CDS, reverse complemented, tr... gi\|46434531, gi\|... - gi\|68486154\|ref\|XP_713027.1\| hypothetical protein CaO19.1160 [Candida albicans SC5314], gi\|68486085\|...	220.0	[0..2]	[185..1]

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Predicted Domain #1

Region A:
Residues: [1-137]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIVLNALSYL GIVLGFIGMT VSIASALYYI SEFVEEHSRL AKAFLCRLVY FIMAVMVFLV  60
   61 IFDGFPFWLS AFSIFSHYIY KINFDTFPFF SFKRMRFLLA CFLIVANHIL WVRFFQVHEF 120
  121 PIKPRGLTYD FVGQRLL

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [138-227]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TSRASFSQVA SFMGVCVWSV PIGIFVSFTA ADNTLPTITT PSSSSPDAYS SGSSRRTSNV  60
   61 LRQAYKKLGI FVERSLTSLG LSDRSSERYV

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits