YRC Public Data Repository - Protein Structure Prediction

Protein:	COA1_SCHPO
Organism:	Schizosaccharomyces pombe 972h-
Length:	249 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for COA1_SCHPO.

Description	E-value	Query Range	Subject Range
gi\|85110561 - gi\|85110561\|ref\|XP_963520.1\| hypothetical protein NCU06748 [Neurospora crassa OR74A] gi\|28925203, gi\|... - gi\|32413108\|ref\|XP_327034.1\| hypothetical protein [Neurospora crassa], gi\|28925203\|gb\|EAA34284.1\| co...	230.0	[0..99]	[238..38]
gi\|46109320, gi\|... - gi\|46109320\|ref\|XP_381718.1\| hypothetical protein FG01542.1 [Gibberella zeae PH-1], gi\|42545325\|gb\|E...	227.0	[0..78]	[238..10]
gi\|38108523, gi\|... - gi\|39968839\|ref\|XP_365810.1\| hypothetical protein MG02512.4 [Magnaporthe grisea 70-15], gb\|EAA54527....	225.0	[0..103]	[238..39]
gi\|70994896, gi\|... - gi\|70994896\|ref\|XP_752225.1\| conserved hypothetical protein [Aspergillus fumigatus Af293], gi\|668498... gi\|159124861 - gi\|159124861\|gb\|EDP49978.1\| conserved hypothetical protein [Aspergillus fumigatus A1163]	205.0	[0..99]	[238..34]
gi\|49093966, gi\|... - gi\|67528202\|ref\|XP_661911.1\| hypothetical protein AN4307.2 [Aspergillus nidulans FGSC A4], ref\|XP_40...	202.0	[0..101]	[238..35]
gi\|238492066, gi... - gi\|238492066\|ref\|XP_002377270.1\| conserved hypothetical protein [Aspergillus flavus NRRL3357], gi\|22... gi\|169774033 - gi\|169774033\|ref\|XP_001821485.1\| hypothetical protein [Aspergillus oryzae RIB40] gi\|83769346 - gi\|83769346\|dbj\|BAE59483.1\| unnamed protein product [Aspergillus oryzae]	195.0	[0..101]	[238..35]
COA1_YEAST - Cytochrome c oxidase assembly factor 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=C... COA1 - Mitochondrial inner membrane protein required for assembly of the cytochrome c oxidase complex (comp...	194.0	[0..109]	[238..58]
gi\|68477736, gi\|... - gi\|68477736\|ref\|XP_717020.1\| potential mitochondrial protein Fmp35 [Candida albicans SC5314], gi\|684... orf19.12755, orf... - orf19.5296 CGDID:CAL0003681 Assembly 19, Contig19-10225 (15720, 15058) CDS, reverse complemented, tr... gi\|238881454 - gi\|238881454\|gb\|EEQ45092.1\| conserved hypothetical protein [Candida albicans WO-1]	175.0	[0..104]	[238..76]
gi\|116199551, gi... - gi\|88179210\|gb\|EAQ86678.1\| hypothetical protein CHGG_07931 [Chaetomium globosum CBS 148.51], gi\|1161...	175.0	[0..116]	[238..76]
gi\|45198817, gi\|... - gi\|45198817\|ref\|NP_985846.1\| AFR299Wp [Ashbya gossypii ATCC 10895], gi\|44984846\|gb\|AAS53670.1\| AFR29... gi\|44984846 - gi\|44984846\|gb\|AAS53670.1\| AFR299Wp [Ashbya gossypii ATCC 10895]	173.0	[0..109]	[238..44]

Back

Predicted Domain #1

Region A:
Residues: [1-114]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MISSKSLDYT RFLPFFAALV RGHCLTVKSP THNCGSGVKT IMDKSSIFLK NRYPISINRF  60
   61 VQQRKTFCGA SVCLHKVLVQ RQFGFEEKSH GLKYKKLFRR NIGTSEKKNR LPDL

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [115-249]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LELSSSPRRL PILFAAFCLL WGTCAVLAIQ YGKQNSNVTQ VVMYRVQHSK EAQDLLGSNI  60
   61 DFKYPFPWVP GKLHKRQGFI DINFEVSGSL ASGTVHYQSQ RFGPIAHWVE LDCTLTSNGK 120
  121 TIKIPTGVSK DTQWT

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.57
Match:	2ciuA
Description:	No description for 2ciuA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits