YRC Public Data Repository - Protein Structure Prediction

Protein:	GGACT_MOUSE
Organism:	Mus musculus
Length:	149 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for GGACT_MOUSE.

Description	E-value	Query Range	Subject Range
gi\|49259570 - gi\|49259570\|pdb\|1VKB\|A Chain A, Crystal Structure Of A Protein With Unknown Function From Upf0131 Fa...	197.0	[0..1]	[149..13]
GGACT_RAT - Gamma-glutamylaminecyclotransferase OS=Rattus norvegicus GN=Ggact PE=2 SV=1	194.0	[0..1]	[149..1]
gi\|13279332 - gi\|13279332\|gb\|AAH04360.1\| A2LD1 protein [Homo sapiens]	183.0	[0..1]	[149..64]
gi\|73989450 - gi\|73989450\|ref\|XP_542653.2\| PREDICTED: similar to CG2811-PA [Canis familiaris]	165.0	[0..1]	[149..64]
GGACT_BOVIN - Gamma-glutamylaminecyclotransferase OS=Bos taurus GN=GGACT PE=2 SV=1	162.0	[0..4]	[149..29]
gi\|50730609 - gi\|50730609\|ref\|XP_416969.1\| PREDICTED: hypothetical protein isoform 2 [Gallus gallus]	161.0	[0..1]	[149..10]
gi\|58381672, gi\|... - gi\|58381672\|ref\|XP_311399.2\| ENSANGP00000016842 [Anopheles gambiae str. PEST], gi\|55242888\|gb\|EAA070...	159.0	[0..1]	[142..6]
gi\|54635434, gi\|... - gi\|54635434\|gb\|EAL24837.1\| GA15469-PA [Drosophila pseudoobscura], gi\|125807087\|ref\|XP_001360262.1\| G...	154.0	[0..3]	[140..6]
gi\|66522157 - gi\|66522157\|ref\|XP_623476.1\| PREDICTED: similar to CG2811-PA isoform 2 [Apis mellifera]	153.0	[0..1]	[147..40]

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Predicted Domain #1

Region A:
Residues: [1-149]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAHIFVYGTL KRGQPNHKVM LDHSHGLAAF RGRGCTVESF PLVIAGEHNI PWLLYLPGKG  60
   61 HCVTGEIYEV DEQMLRFLDD FEDCPSMYQR TALQVQVLEW EGDGDPGDSV QCFVYTTATY 120
  121 APEWLFLPYH ESYDSEGPHG LRYNPRENR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	51.0
Match:	1vkbA
Description:	Crystal structure of hypothetical protein from Mus musculus at 1.90 A resolution
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits