YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|108777317, gi...
Organism:	Yersinia pestis Nepal516
Length:	366 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|108777317, gi....

Description	E-value	Query Range	Subject Range
gi\|45443613, gi\|... - gi\|45443613\|ref\|NP_995152.1\| putative sulfite oxidase subunit YedY [Yersinia pestis biovar Microtus ... gi\|89105382 - gi\|89105382\|ref\|ZP_01177902.1\| COG2041: Sulfite oxidase and related enzymes [Yersinia pestis biovar ... gi\|77634303 - gi\|77634303\|ref\|ZP_00796406.1\| COG2041: Sulfite oxidase and related enzymes [Yersinia pestis Angola]	0.0	[1..366]	[23..388]
gi\|21956878, gi\|... - gi\|22124125\|ref\|NP_667548.1\| putative sulfite oxidase subunit YedY [Yersinia pestis KIM], gi\|2195687...	0.0	[1..366]	[29..394]
gi\|77630569, gi\|... - gi\|77630569\|ref\|ZP_00793155.1\| COG2041: Sulfite oxidase and related enzymes [Yersinia pseudotubercul...	0.0	[1..366]	[23..388]
MSRP_YERPS - Protein-methionine-sulfoxide reductase catalytic subunit MsrP OS=Yersinia pseudotuberculosis serotyp... Y3568_YERPS, YED... - Sulfoxide reductase catalytic subunit yedY OS=Yersinia pseudotuberculosis GN=yedY PE=3 SV=1, UPF0190... gi\|169749247, gi... - gi\|170022713\|ref\|YP_001719218.1\| putative sulfite oxidase subunit YedY [Yersinia pseudotuberculosis ... gi\|186700079, gi... - gi\|186897053\|ref\|YP_001874165.1\| putative sulfite oxidase subunit YedY [Yersinia pseudotuberculosis ...	0.0	[1..366]	[1..366]
gi\|77961451, gi\|... - gi\|77961451\|ref\|ZP_00825288.1\| COG2041: Sulfite oxidase and related enzymes [Yersinia mollaretii ATC...	0.0	[37..366]	[24..353]
gi\|238782966, gi... - gi\|77958854\|ref\|ZP_00822881.1\| COG2041: Sulfite oxidase and related enzymes [Yersinia bercovieri ATC...	0.0	[30..366]	[10..346]
gi\|77978752, gi\|... - gi\|77978752\|ref\|ZP_00834177.1\| COG2041: Sulfite oxidase and related enzymes [Yersinia intermedia ATC...	0.0	[1..366]	[1..348]
gi\|77973460, gi\|... - gi\|77973460\|ref\|ZP_00829008.1\| COG2041: Sulfite oxidase and related enzymes [Yersinia frederiksenii ...	0.0	[26..366]	[8..348]
gi\|113888803, gi... - gi\|78690518\|ref\|ZP_00855163.1\| conserved hypothetical protein [Shewanella sp. MR-7], gi\|78510125\|gb\|...	0.0	[26..366]	[5..344]
gi\|82406310, gi\|... - gi\|82495718\|ref\|ZP_00881292.1\| conserved hypothetical protein [Shewanella sp. MR-4], gi\|82406310\|gb\|...	0.0	[26..366]	[5..344]

Back

Predicted Domain #1

Region A:
Residues: [1-366]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHNTFTHTKN NTHTKNNTQA KNSGSQTKSN AVSLNKPRKL TEADVTPESI FYQRRKVLQA  60
   61 LGITAATLAL PASAQADLLA WFKGNEPPKA PSGKPLTFTP SAAYHPDLAL TPEDKVTGYN 120
  121 NFYEFGLDKA DPAANAGTLK TEDWQIKIDG DVVKPMTLDM DYLMKCFPLE ERIYRLRCVE 180
  181 AWSMVVPWIG FELGKLLKLA EPTSNARYVA FQTLYAPDQM PGQKNRFIGG GLDYPYVEGL 240
  241 RLDEAMHPLA FMVVGVYGKT LPPQNGAPLR LMTPWKYGFK SIKSIVHIRL TRDQPPTTWN 300
  301 LSAPNEYGFY ANVNPHVDHP RWSQATERVI GSGGILDVKR QPTLLFNGYA EQVASLYRGL 360
  361 DLRKNF

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	94.0
Match:	1xdqA
Description:	Structural and Biochemical Identification of a Novel Bacterial Oxidoreductase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	0.408279424117055	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: