YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|229901252, gi...
Organism:	Yersinia pestis Nepal516
Length:	486 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|229901252, gi....

Description	E-value	Query Range	Subject Range
gi\|152959989, gi... - gi\|77631870\|ref\|ZP_00794456.1\| COG2195: Di- and tripeptidases [Yersinia pseudotuberculosis IP 31758]...	5.0E-79	[1..486]	[1..486]
gi\|162418581, gi... - gi\|77634939\|ref\|ZP_00797030.1\| COG2195: Di- and tripeptidases [Yersinia pestis Angola], gi\|162418581...	2.0E-78	[1..486]	[1..486]
gi\|28897445, gi\|... - gi\|28897445\|ref\|NP_797050.1\| aminoacyl-histidine dipeptidase [Vibrio parahaemolyticus RIMD 2210633],... gi\|28805657 - gi\|28805657\|dbj\|BAC58934.1\| aminoacyl-histidine dipeptidase [Vibrio parahaemolyticus RIMD 2210633]	7.0E-78	[2..485]	[6..489]
gi\|238795606, gi... - gi\|77962908\|ref\|ZP_00826723.1\| COG2195: Di- and tripeptidases [Yersinia mollaretii ATCC 43969], gi\|2...	1.0E-77	[1..485]	[1..485]
gi\|77974372, gi\|... - gi\|77974372\|ref\|ZP_00829913.1\| COG2195: Di- and tripeptidases [Yersinia frederiksenii ATCC 33641], g...	1.0E-77	[1..485]	[1..485]
gi\|62126520, gi\|... - gi\|62178887\|ref\|YP_215304.1\| aminoacyl-histidine dipeptidase (peptidase D) [Salmonella enterica subs...	3.0E-77	[1..485]	[1..485]
gi\|238784452, gi... - gi\|77957137\|ref\|ZP_00821201.1\| COG2195: Di- and tripeptidases [Yersinia bercovieri ATCC 43970], gi\|2...	3.0E-77	[1..485]	[1..485]
gi\|75237305, gi\|... - gi\|75237305\|ref\|ZP_00721352.1\| COG2195: Di- and tripeptidases [Escherichia coli E110019], gi\|1930686... gi\|190904200, gi... - gi\|75231163\|ref\|ZP_00717585.1\| COG2195: Di- and tripeptidases [Escherichia coli B7A], gi\|191165693\|r... gi\|157159719, gi... - gi\|75194456\|ref\|ZP_00704526.1\| COG2195: Di- and tripeptidases [Escherichia coli HS], gi\|157159719\|re... gi\|157077529, gi... - gi\|75189341\|ref\|ZP_00702608.1\| COG2195: Di- and tripeptidases [Escherichia coli E24377A], gi\|1571554... gi\|218552841, gi... - gi\|218552841\|ref\|YP_002385754.1\| aminoacyl-histidine dipeptidase (peptidase D) [Escherichia coli IAI... gi\|209910707, gi... - gi\|209917448\|ref\|YP_002291532.1\| aminoacyl-histidine dipeptidase [Escherichia coli SE11], gi\|2099107...	5.0E-77	[1..485]	[1..485]
gi\|56414556, gi\|... - gi\|56414556\|ref\|YP_151631.1\| aminoacyl-histidine dipeptidase precursor [Salmonella enterica subsp. e... gi\|197094963, gi... - gi\|197363486\|ref\|YP_002143123.1\| aminoacyl-histidine dipeptidase precursor [Salmonella enterica subs...	6.0E-77	[1..485]	[1..485]
gi\|193063228, gi... - gi\|75258760\|ref\|ZP_00730150.1\| COG2195: Di- and tripeptidases [Escherichia coli E22], gi\|193063228\|r... gi\|194427573, gi... - gi\|75211195\|ref\|ZP_00711302.1\| COG2195: Di- and tripeptidases [Escherichia coli B171], gi\|194427573\|... gi\|218350452, gi... - gi\|218693720\|ref\|YP_002401387.1\| aminoacyl-histidine dipeptidase (peptidase D) [Escherichia coli 559...	7.0E-77	[1..485]	[1..485]

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Predicted Domain #1

Region A:
Residues: [1-486]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSELSQLSPQ PLWDIFAKIC SIPHPSYHEE ALAQYIVTWA KEKGLHAERD QVGNILLRKP  60
   61 ATKGMENRKP VALQAHLDMV PQKNNDTVHD FTKDPIQPYI DGEWVKARGT TLGADNGIGM 120
  121 ASALAVLSDD RVEHGPLEVL LTMTEEAGMD GAFGLQPNWL KADILINTDS EQEGEIYMGC 180
  181 AGGIDFITTM PLQREAIPAG YQTLKLTIKG LKGGHSGADI HLGLGNANKL LARFLFEQAK 240
  241 DLDLRVLDLN GGTLRNAIPR EGHVTLAVAA DKVEQLKKLS QNYLATLKDE LIAVEKNLTL 300
  301 VLEPVSTETK ALTKETQQRF VALLNATPNG VIRMSDAVKG VVETSLNVGV VTMNEHEAEI 360
  361 VCLIRSLIDS GKDYVASMLT AIGELAGAKT SPSGGYPGWQ PDPTSPVMAL VRETYQKLFN 420
  421 KTPNIMVIHA GLECGLFKKP YPNMDMVSIG PTMTGPHSPD EQVHIESVGQ YWQLLTALLK 480
  481 AIPERT

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	70.522879
Match:	2qyvA
Description:	No description for 2qyvA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits